Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq946 95.1 1e-14 seq977 89.7 4e-13 >seq946 Length=5553863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| ||||| || ||||| ||||||||||| || Sbjct 333415 TTGATCATCGTTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATA 333474 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || || ||| ||| ||| |||||||||||| || || ||| |||| || ||||| Sbjct 333475 TTATAGTCGGCCAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGC 333534 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||||| || Sbjct 333535 TGATCAGGAGGAATACCTTCTTTKTC 333560 >seq977 Length=5547227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| || | |||||| ||||| || || || || |||||||| || Sbjct 1049762 CCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCC 1049703 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||| || || || ||| | || || | ||| ||||| || Sbjct 1049702 AAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 1049643 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| || || ||| ||| ||||| | | | | | ||| | || | || Sbjct 1049642 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATC-CGAGCTCTCGAC 1049584 Query 20162 -TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||| || || || || | |||||||||||||||||||| Sbjct 1049583 CTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||| |||||| || ||||| || || ||||| ||||| | | || | ||| Sbjct 917743 CAACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATC 917684 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| || |||||||| ||| |||| || | ||| ||||| || | |||||||||||| Sbjct 917683 TTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTC 917624 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||| || || || | | ||| || ||| || | || |||| ||||||| Sbjct 917623 CTGAATCTTGGCCTTGACATTGTCAATAGTGTCG-GAGCTCTCAACCTCCAAAGTAATGG 917565 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || ||||| || || ||||| || ||||| Sbjct 917564 TCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 917531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582193669099