Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq977 104 2e-17 seq978 93.3 4e-14 seq959 87.8 2e-12 seq964 86.0 5e-12 seq937 82.4 6e-11 >seq977 Length=5547227 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| |||||||| ||||| || | || ||||||| || || Sbjct 1026554 ATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTG 1026613 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || | |||| ||||||||||| || | | |||||||| || || Sbjct 1026614 TTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 1026673 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||||| | ||| ||||| || |||||||||||||| Sbjct 1026674 AGCCTTGACATTATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTTACCGGT 1026733 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||| ||||||||| Sbjct 1026734 TAGGGTTTTCACAAAGATCTGCATC 1026758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| |||||||| ||||| || | || ||||||| || || Sbjct 1049283 ATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCGAGCGTCCGGCCGTCCTCGAGTTG 1049224 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | ||||||||||| || | || ||||| || || || Sbjct 1049223 CTTGCCGGCGAAAATGAGGCGCTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATCTT 1049164 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | ||| ||||| || ||||| || ||||| Sbjct 1049163 AGCCTTGACATTATCAATGGTATCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 1049104 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTG 48730 || |||||||||||||| |||||| || Sbjct 1049103 TAGGGTTTTCACAAAAATTTGCATCTTG 1049076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| ||| ||||||||||| ||||| |||| ||| |||| || Sbjct 1025864 CACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCCAGGGTTCGGCCGTCTTC 1025923 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || || | || || ||| || | | |||||| ||| Sbjct 1025924 CAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGGATCCCTTCCTTATCCTG 1025983 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | || ||||| | | || ||| | ||| |||||||| Sbjct 1025984 AATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACCTCAAGTGTGATGGTTTT 1026043 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| ||||| ||||| |||||||| Sbjct 1026044 ACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| || || | |||||| || |||||| || ||||||||||| || Sbjct 1026074 ACCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 1026133 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||||| |||||| ||| | | || | ||||||||||| || Sbjct 1026134 CAAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGG 1026193 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || ||| || ||| | |||| ||||| | ||| Sbjct 1026194 AATCCCTTCCTTATCTTGAATCTTTGCCTTCACGTTGTCTATCGTATCAGAGCTCTCGAC 1026253 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || ||||| || || ||||| |||||||| |||||| Sbjct 1026254 CTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATC 1026302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| || || | |||||| || |||||||||||| || ||||| | | Sbjct 1026303 CCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATC-GGC 1026361 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || ||||||||| |||||| || || | || | | |||||| ||| || Sbjct 1026362 AAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGG 1026421 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| || |||||| ||||| | || || |||| | ||| Sbjct 1026422 AATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAAC 1026481 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||| |||||||| ||||| |||||||| Sbjct 1026482 CTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 >seq978 Length=8767375 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | || || ||||| || |||||| ||||||||||||||||| Sbjct 3246076 CCTCCCCTCAGCCTGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 3246135 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || ||| |||| || |||||||| ||| | | || || | |||||| || || Sbjct 3246136 AGAGTG-CGCCCGTCTTCAAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGG 3246194 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | || ||||| || |||||| |||| | | | |||||||| | | ||| Sbjct 3246195 GATACCCTCCTTATCTTGAATTTT-GGCTTTCACGTTGTCAATGGTATCAGAACTCTCGA 3246253 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || |||||||| ||||| ||||||||||| Sbjct 3246254 CTTCCAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 3246302 >seq959 Length=5381930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||| ||||| || |||||||| || || | || |||| || |||||| Sbjct 731810 TGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTCGAGCTGC 731751 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||| ||||| ||| || | | ||||||||| ||||| Sbjct 731750 TTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTG 731691 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||| | || || || || || ||| Sbjct 731690 GCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTG 731631 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||||||||| Sbjct 731630 AGGGTTTTGACGAAAATCTGCAT 731608 >seq964 Length=1826015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| | ||| || || || ||| |||||| || |||||||||||||| Sbjct 764730 CCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 764789 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | || ||||||||||| || || |||| || | |||||| || || Sbjct 764790 AGAGTACGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 764849 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||| ||| ||| || ||||| | | ||||| |||| ||| | Sbjct 764850 ATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACC 764909 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| || || ||||| || ||||| Sbjct 764910 TCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 764956 >seq937 Length=9237706 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| || | || | ||||| |||||||||||| || | Sbjct 196062 CTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCGAGCTGCTTACCGGCGAA 196003 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | |||||| || || || ||||| | Sbjct 196002 GATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTAGCCTTGACATT 195943 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| || || ||| | |||||||| ||||| || || |||||||| Sbjct 195942 GTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTACCCGTTAGGGTTTTCAC 195883 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 195882 GAAGATCTGCATC 195870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246173814979