Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq976 114 7e-21 seq151 113 2e-20 seq943 109 3e-19 seq941 109 3e-19 seq950 107 1e-18 seq958 105 3e-18 seq948 105 3e-18 seq562 105 3e-18 >seq976 Length=16402300 Score = 114 bits (126), Expect = 7e-21 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| || ||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 4581398 AATATCAATTCACTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 4581339 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||||||| ||||||||||||||| |||| ||| ||| Sbjct 4581338 GACGCTCTAACCAACTGAGCTAATAGGCCATCGTCGA 4581302 Score = 107 bits (118), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 |||||| |||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 4598715 TCAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTA 4598657 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 4598656 ACCAACTGAGCTAATAGGCC 4598637 >seq151 Length=199743 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 168843 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 168900 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 168901 CTCTAACCAACTGAGCTAATGGGCC 168925 >seq943 Length=11499313 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 11237142 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11237201 Query 11516 TGAGCTAATGGGCCGTCGA 11534 ||||||||| |||| |||| Sbjct 11237202 TGAGCTAATAGGCCCTCGA 11237220 >seq941 Length=10723577 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3808988 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3808929 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3808928 TGAGCTAATGGGCC 3808915 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11458 GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTG 11517 ||||||| | | |||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 4389221 GCCCATGCAGGTCTCGAACCTGCGACCTTCCCGTTATTAGCACGACGCTCTAACCAACTG 4389280 Query 11518 AGC 11520 ||| Sbjct 4389281 AGC 4389283 >seq950 Length=8950308 Score = 107 bits (118), Expect = 1e-18 Identities = 91/112 (81%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 11424 CAGGGAAATATAGAATTAATAA------AAAATCAAATTGGCCCATGAAAGGATCGAACC 11477 |||||||| | | || ||||| |||| ||| | |||||||| | | ||||||| Sbjct 6687897 CAGGGAAAGAAAAAAGGAATAATAGGTGAAAAACAACT-GGCCCATGCAGGTCTCGAACC 6687955 Query 11478 TTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 6687956 TGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 6688007 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 7462900 AAAAAGGAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 7462959 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 7462960 GCTCTAACCAACTGAGCTAACAGGCC 7462985 >seq958 Length=4564124 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 213926 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 213867 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 213866 TGAGCTAATAGGCCG 213852 >seq948 Length=7662486 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4553938 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4553879 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 4553878 CTGAGCTAATAGGCC 4553864 >seq562 Length=5960891 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3712767 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3712826 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3712827 CTGAGCTAATAGGCC 3712841 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 862172 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 862113 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 862112 TGAGCTAATAGGCC 862099 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488080001404