Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq970 154 2e-33 seq977 123 4e-24 seq953 122 1e-23 >seq970 Length=9310200 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||||| ||||||||||| ||||| || ||||| || || Sbjct 1133192 GCAAAGCGTCACCGTAAGGTGCTTCGCGATAACATCCAGGGAATTACAAAGCCGGCGATT 1133133 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||| | || || || |||||| || ||| || ||||||| |||| Sbjct 1133132 CGTCGATTGGCTCGTAGAGGAGGCGTGAAGCGTATCAGTGGTCTGATCTATGAGGAGACA 1133073 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| |||||||| ||||| | | ||||||| |||||| || || || ||| Sbjct 1133072 AGGGGTGTCTTGAAGATTTTCCTTGAAAATGTTATCCGTGATGCAGTCACATACACAGAG 1133013 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | |||||||| || |||||||| | ||||||||| |||| || || ||| Sbjct 1133012 CACGCTAGGAGGAAGACTGTGACAGCCATGGATGTGGTCTATGCACTGAAGCGGCAGGGC 1132953 Score = 149 bits (164), Expect = 1e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||| ||||| || || ||| | || || | | ||||| ||| Sbjct 827628 GATAACATTCAGGGAATCACTAAGCCTGCCATTCGTAGGCTTGCCAGAAGAGGTGGTGTC 827687 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | ||||| || ||||||| |||| ||||| ||| ||||||||||||| || Sbjct 827688 AAGAGAATTTCTGGGCTGATCTATGAGGAGACTCGTGGTGTCCTGAAGATCTTCCTGGAG 827747 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| | ||||||| | ||| || ||||| ||| |||||||| || || | Sbjct 827748 AATGTTATTCGTGATGCTGTTACCTACACTGAGCATGCTCGCCGTAAGACAGTGACTGCT 827807 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || |||||||||||| | || ||| | | | ||||| ||||| ||||| Sbjct 827808 ATGGATGTTGTTTATGCATTGAAAAGGCAGGGCAGGACTCTCTATGGATTTGGGGGTTAA 827867 >seq977 Length=5547227 Score = 123 bits (136), Expect = 4e-24 Identities = 191/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| | ||||| ||||| || ||||| ||||| || || Sbjct 1704276 GCCAAGCGTCACCGTAAGGTTCTGAGGGATAATATCCAGGGCATCACGAAGCCGGCGATA 1704217 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||||||||| | || |||||||||||| || || | ||||||| |||| Sbjct 1704216 AGGCGTCTGGCTCGCAGAGGAGGAGTCAAGCGTATCAGCGGTCTCATCTATGAGGAGACC 1704157 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| || ||| || || | |||||| || || || ||| Sbjct 1704156 CGTGGTGTCCTCAAGATCTTTCTAGAGAATGTGATACGTGATGCCGTCACATACACTGAG 1704097 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||||||||| | ||||| |||| ||||| ||||| | || || Sbjct 1704096 CACGCCCGTCGCAAGACTGTCACTGCGATGGACGTCGTTTATGCTTTGAAGAGGCAGGGA 1704037 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | |||| || || || ||| | |||| Sbjct 1704036 CGCACCCTTTACGGCTTCGGCGGTTGAGATTCT 1704004 >seq953 Length=1223626 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| | ||||||||||| || ||||| |||||||| ||||| | || || | | || Sbjct 914868 TCTTAGGGATAACATCCAGGGCATCACAAAGCCAGCAATCCGGAGGCTTGCGAGAAGAGG 914927 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| || |||||| |||| || || | | | | |||| | ||||| || Sbjct 914928 CGGCGTGAAGCGTATCAGTGGATTAATCTACGAGGAAACTAGAGGTGTTCTCAAGATTTT 914987 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| |||||| | |||||| | || || ||||| ||| | | |||||||| Sbjct 914988 CTTAGAGAACGTTATTCGGGATGCTGTGACTTACACAGAGCATGCTCGAAGAAAGACTGT 915047 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | |||||||| ||||| | || ||| | | | ||||| ||||| Sbjct 915048 CACTGCTATGGATGTGGTCTATGCTTTGAAGAGGCAGGGCAGGACTCTCTATGGCTTTGG 915107 Score = 93.3 bits (102), Expect = 7e-15 Identities = 183/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || ||||| || ||||| ||||| || || ||||| || || Sbjct 916949 GCAAAGCGGCACCGCAAGGTC-CTTCGCGACAACATTCAAGGGATTACGAAGCCCGCGAT 917007 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || | ||||| | | || || || ||| | || || ||| | ||||| |||| Sbjct 917008 TCGGAGACTGGCGAGGAGAGGCGGCGTAAAGAGAATCAGCGGGTTGATTTATGAGGAGAC 917067 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | ||||||||| | ||| || || | || || | || || || Sbjct 917068 AAGAGGAGTTCTTAAGATCTTCTTGGAGAATGTGATTCGCGACGCGGTGACTTACACTGA 917127 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| | | ||||| || || ||||||| ||||||||||||||||| | || || Sbjct 917128 ACACGCTAGAAGAAAGACCGTGACTGCCATGGACGTCGTCTATGCATTGAAAAGGCAGGG 917187 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | ||||| || || ||||| Sbjct 917188 CAGAACTCTCTATGGCTTCGGCGGTTAA 917215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074304893447