Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq945 87.8 5e-12 seq940 84.2 6e-11 >seq945 Length=13627481 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 111697 TGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTG 111756 ||||| ||||||||||| | |||| | | | || || |||||||| || |||||||||| Sbjct 1283328 TGTGC-AGTTTTATGTAGCCAACGGCAAGTTATCTTGTCAAATGTACCAACGATCTGCTG 1283386 Query 111757 ATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCG 111816 | || ||||| || || || ||||| |||||| ||| || || | || ||| | || | Sbjct 1283387 ACATGGGTCTAGGAGTGCCATTTAACATTGCATCTTATGCTCTTTTGACATGCATGATTG 1283446 Query 111817 CTCAT 111821 ||||| Sbjct 1283447 CTCAT 1283451 >seq940 Length=8971605 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 ||||| ||||| ||| | | || |||||| || || || || ||||| || || Sbjct 8502508 TCATTTGCGGAGCGTTTGGTCGCCTTTGCTTGCGTCGAGGGGATATTCTTCTCGGGGAGT 8502567 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 ||||| || || |||||| |||| ||||| | | ||||| ||| | || || || || Sbjct 8502568 TTTTGCGCGATATTTTGGTTAAAGAAACGCGGGCTAATGCCCGGTTTGACCTTCTCGAAC 8502627 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||| |||||||||||||| ||| || || ||||| Sbjct 8502628 GAGTTAATCTCGCGAGATGAGGGTCTCCATTGTGACTTCGCGTG 8502671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303337251465578