Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq978 116 3e-21 seq977 107 2e-18 seq937 98.7 9e-16 seq964 96.9 3e-15 seq946 96.9 3e-15 >seq978 Length=8767375 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | ||||| |||| |||||| | | Sbjct 3246758 ATGCAGATCTTCGTGAAGACCCTTACCGGAAAGACAATTACTCTCGAGGTCGAGAGCTCC 3246699 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| || || ||||| || ||||| ||||| Sbjct 3246698 GACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAG 3246639 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | || ||| ||||||||||| || | ||| | | | |||||| ||| Sbjct 3246638 CAAAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGGACCCTTGCCGATTACAAC 3246579 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || || | || || || | | |||||||||| Sbjct 3246578 ATTCAAAAGGAGTCAACCCTCCACTTGGTCCTCCGTCTGAGAGGAGG 3246532 >seq977 Length=5547227 Score = 107 bits (118), Expect = 2e-18 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | ||||| | || || ||| | | Sbjct 917531 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 917590 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| |||||||||||||| ||||| ||||| Sbjct 917591 GACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAG 917650 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACA-GAAACGT-CAGCGATTATA 24168 ||| | ||||||| | ||||| || | ||||||| || || || | || ||||||| Sbjct 917651 CAGCGTCTGATTTTTGCTGGCAAACAGTTTGAAGATGGCAGGACACTTGCA--GATTATA 917708 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || ||||| || | ||| ||||| ||||||| ||||| Sbjct 917709 ACATCCACAAGGAATCAACTCTACATCAGGTGTTGTGATTGAG-GGAGG 917756 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || ||| | || || |||| |||||| | Sbjct 1026757 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAAACCATCACTCTCGAGGTCGAGAGTTCC 1026698 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 1026697 GATACCATCGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAG 1026638 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || |||||| |||||||| || | | | | | |||||||||| Sbjct 1026637 CAGCGCCTAATCTTCGCCGGCAAACAACTCGAGGACGGTCGGACCCTAGCCGATTATAAC 1026578 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 1026577 ATTCAGAAGGAGTCCAC 1026561 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | ||||| ||||| |||| || || | || || |||| |||||| Sbjct 1049076 CAAGATGCAAATTTTTGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAG 1049135 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||| || | ||||| ||||| || || || || || ||||| || Sbjct 1049136 TTCTGATACCATTGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATTCCTCCAGA 1049195 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || |||| || ||||||||||||||| || | | | | || |||||| Sbjct 1049196 TCAGCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGGACGCTCGCCGATTA 1049255 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||||||| || || || || Sbjct 1049256 TAACATTCAGAAGGAGTCCAC 1049276 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||| || || | || | ||||||||| | Sbjct 4466030 ATGCAAATCTTTGTGAAAACCCTAACTGGTAAGACGGTAACGTTGGAAGTCGAGAGCTCT 4466089 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || || |||||| |||||||||||||| |||||||||||| Sbjct 4466090 GACGCGATTGATAATGTTAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCCGATCAA 4466149 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||||| || ||| ||||| | || ||| | | ||||| || Sbjct 4466150 CAGCTCTTGATTTTCGCCGGAAAGCAGTTGGAGGAT----------TGGGTGATTACAAG 4466199 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||||| || ||||| | ||| | || ||||| Sbjct 4466200 ATTCAAAAGGAGTCTACTTTGCATCTTGTTTTAAG 4466234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || |||||||| || || || ||||||| | || || ||| | Sbjct 1025845 ATGCAGATATTCGTTAAAACATTGACCGGGAAGACGATTACGCTGGAGGTTGAGAGCTCA 1025786 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || ||||||| ||||| || || || ||||| ||||| Sbjct 1025785 GATACCATAGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAG 1025726 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || |||||||| ||||||| | | | | ||||||||| Sbjct 1025725 CAGAGGCTTATCTTCGCTGGGAAGCAACTTGAAGATGGCCGTACTCTGGCTGATTATAAC 1025666 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 1025665 ATCCAGAAGGAATCGACTCTTCA 1025643 >seq937 Length=9237706 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| | || ||||| || Sbjct 195868 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTGGAGGTCGAATCC 195927 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||| || | ||||| ||||| || || |||||||| || || ||| Sbjct 195928 TCCGACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGCATCCCACCTGAT 195987 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTA 24166 || ||| | || || | || ||| ||||| ||||| |||| ||||| | | |||| |||| Sbjct 195988 CAGCAGCGGCTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCAGAACCCT-AGCGGATTA 196046 Query 24167 TAACATTCAAAAAGAATCTAC 24187 |||||| || || || ||||| Sbjct 196047 TAACATCCAGAAGGAGTCTAC 196067 >seq964 Length=1826015 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 23975 TTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 |||||| ||||| | |||| | ||||| || || | |||||||| | ||||| | Sbjct 765199 TTTTTATTTAAACAGA-TGCAGATCTTTGTTAAGACCCTTACTGGAAAGACAATTACTCT 765141 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 ||| |||||| | ||||||||| || | || || |||||| || || ||||| Sbjct 765140 CGAGGTCGAGAGCTCCGACACCATAGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGG 765081 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAA 24154 || || || || || || || ||||| | | ||| ||||| ||||| || | ||||| Sbjct 765080 GATTCCCCCAGACCAGCAAAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAAC 765021 Query 24155 CGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGG 24214 | ||||| ||||||||||| ||||| || | || || || | | ||||| || Sbjct 765020 TCTTGCTGATTACAACATTCAAAAGGAATCGACCCTCCACTTGGTTCTTCGTTTGAGGGG 764961 Query 24215 AGG 24217 ||| Sbjct 764960 AGG 764958 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || ||| | || |||||| Sbjct 764500 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTCGAGAGTTCT 764441 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| || ||| ||||| ||||| || || || || || Sbjct 764440 GATACCATTGACAATGTGAAAGCTAAAATTCAAGACAAGGAAGGTATCCCACCAGACCAG 764381 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||||||||| ||||| || | | | | | || |||||| Sbjct 764380 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGCACCCTTGCTGACTATAAC 764321 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || ||||| || |||| || || | |||||||| |||||| Sbjct 764320 ATTCAGAAGGAATCCACCCTTCACTTGGTCCTCAGATTGAGGGGAGGA 764273 >seq946 Length=5553863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || |||||||| || ||||| ||||| ||||||||||||| | || |||||| | ||| Sbjct 333560 GAMAAAGAAGGTATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 333501 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | | | | ||| ||||| || ||||||||||| ||| |||| || || || Sbjct 333500 GATGGCCGTACTTTGGCCGACTATAATATCCAAAAAGAATCAACACTTCACTTGGTTTTG 333441 Query 24204 AGATTGAGAGGAGGA 24218 || | ||||||||| Sbjct 333440 AGGCTCAGAGGAGGA 333426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429930870191745