Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq977 107 2e-18 seq937 89.7 4e-13 >seq977 Length=5547227 Score = 107 bits (118), Expect = 2e-18 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | || || || |||||||| | || ||| | | Sbjct 917531 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 917590 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || ||| || ||||||||| | || |||||| Sbjct 917591 GACACTATTG-ACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCA 917649 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || |||| ||| |||||||| || ||||||| || || | || |||||||| Sbjct 917650 GCAGCGTCTGATTTTTGCTGGCAAACAGTTTGAAGATGGCAGGACACTTGCAGATTATAA 917709 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || || || ||| ||||| ||||||| ||||| | ||||| Sbjct 917710 CATCCACAAGGAATCAACTCTACATCAGGTGTTGTGATTGAG-GGAGG 917756 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| || ||||||||||| ||||| || |||||||| || | || || || | Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | ||| ||| | || || ||| ||| ||||| ||||| |||| || | Sbjct 1026013 G--ATACTATTGATAATGTCAAGACAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACC 1025956 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | |||||| | || | ||| || || || || ||||| | | |||| |||| ||||||| Sbjct 1025955 AACAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATA 1025896 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||||||||||||| || | ||| ||||| || Sbjct 1025895 ACATTCAAAAAGAGTCCACGCTTCATCTGGTGCTG 1025861 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| || || || || || |||||| | || ||| | Sbjct 1049536 ATGCAAATTTTTGTCAAAACCCTAACTGGTAAGACGATTACCTTGGAGGTCGAGAGCTCG 1049595 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | ||||| || || ||| ||| ||||| |||||| | || ||||| Sbjct 1049596 GATAC-AATAGACAACGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCA 1049654 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || || || ||||| | || |||| |||| ||||| || Sbjct 1049655 GCAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCAGAACCTTGGCGGATTACAA 1049714 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || |||||||| ||||| | || ||||| Sbjct 1049715 TATTCAGAAGGAGTCTACCCTACATCTCGTTTTGAG 1049750 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| || || || || || ||||| | || ||| | Sbjct 1026301 ATGCAAATTTTTGTCAAAACCCTAACTGGTAAGACGATTACGTTGGAGGTCGAGAGCTCT 1026242 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | ||||| || || ||| ||| ||||| ||||| | || |||||| Sbjct 1026241 GATAC-GATAGACAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATTCCTCCTGATCA 1026183 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || || || || || | || |||| |||| ||||| || Sbjct 1026182 GCAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAGGACGGCAGAACCTTGGCGGATTACAA 1026123 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||| || || ||||| || | ||| | || ||||| Sbjct 1026122 CATCCAGAAGGAGTCGACCCTTCATCTCGTCTTGAG 1026087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || ||||| |||| ||||||||||||| | || | ||| || |||||| | || Sbjct 916940 GACAAGGAAGGTATCCCACCTGATCAGCAAAGATTGATCTTTGCTGGGAAACAACTGGAG 916999 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| | || || || ||||||||||||||||| || ||||| | || ||| Sbjct 917000 GATGGTCGAACCCTTGCTGACTACAACATTCAAAAAGAGTCCACCTTACATCTTGTCTTG 917059 Query 115499 AGATTGCGAGGAGGAA 115514 || | || || |||| Sbjct 917060 CGACTTCGTGGTGGAA 917075 >seq937 Length=9237706 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || || || ||||| || ||||| || ||||| ||| | || || ||| Sbjct 195868 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTGGAGGTCGAATCC 195927 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 |||||| ||| |||| || || || || ||||| |||||| |||| ||| Sbjct 195928 TCCGACACCATTG-ACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGCATCCCACCTGA 195986 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| | ||||| | || || || || | || |||| || |||| | || ||||| Sbjct 195987 TCAGCAGCGGCTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCAGAACCCTAGCGGATTA 196046 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 |||||| || || |||||||| Sbjct 196047 TAACATCCAGAAGGAGTCTAC 196067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425338924981480