Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq977 140 3e-28 seq978 116 3e-21 seq964 109 5e-19 seq959 105 6e-18 >seq977 Length=5547227 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||||| |||||||| |||||| Sbjct 1026531 CCACCACGGAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCT 1026590 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || || ||||| ||| |||||| |||||||| || |||||| Sbjct 1026591 AGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 1026650 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||| Sbjct 1026651 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCGACC 1026710 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||||||||||||||| ||||| || || |||||||| Sbjct 1026711 TCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||||||||| | ||| | || ||||| ||||||||||| ||||| | Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | |||||| || || |||| || | || |||||||||||| Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | || ||||| | || | |||||| | || | Sbjct 1025967 ATCCCTTCCTTATC-CTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAAC 1026025 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| || ||||| || || |||||||| Sbjct 1026026 CTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | || || | ||| | ||||||||||||||||| || |||||| Sbjct 1026303 CCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1026362 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | |||||| || ||| |||| | | ||||||||||||||| Sbjct 1026363 AGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGA 1026422 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||||| ||||| | || | || |||| ||| | Sbjct 1026423 ATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACC 1026482 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || |||||||||||||| || || |||||||| Sbjct 1026483 TCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | || || | ||| | |||||||||||| || ||||||||||| | Sbjct 1026075 CCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1026134 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| | |||||| || || |||| | |||||||| || ||||| Sbjct 1026135 AAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGA 1026194 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | || ||| | | || | ||||| | | ||||| Sbjct 1026195 ATCCCTTCCTTATC-TTGAATCTTTGCCTTCACGTTGTCTATCGTATCAGAGCTCTCGAC 1026253 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 1026254 CTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||||||||| || |||||| | || || |||||| | |||||| || Sbjct 1049504 GTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTCCTCCAACTGCTTCCCA 1049445 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | | ||||||||||||||| || || || || || ||||| |||| Sbjct 1049444 GCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATCCTGAATTTTGGCCTTG 1049385 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||| | || | |||| || || |||||||||||| Sbjct 1049384 ACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTT 1049325 Query 131218 TTTACGAAAATCTGCATG 131235 || || || || |||||| Sbjct 1049324 TTAACAAATATTTGCATG 1049307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| ||||| || |||||||| |||||| Sbjct 4465820 CCACCACGGAGGCGCAGGACCAGATGGAGGGTGGACTCTTTCTGAATGTTATAATCGGCA 4465761 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || ||| | || | | |||| | ||||| || ||||||||| Sbjct 4465760 AGTGTACGTCCGTCCTCCAGTTGCATCCCGGAGAAGATAAGGCGCTGGTGATCCGGAGGG 4465701 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 | || || || || |||||| ||| | | || | ||||| | ||| | Sbjct 4465700 MTGCCCTCCTTATCTTGGATTTTGGCCTTCACGTTATCGATGGTATCTGAACTCTCAACC 4465641 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 |||| || ||||| || || ||||| | || ||||| |||||||| |||||||| Sbjct 4465640 TCGAGAGTTACGGTCTTGCCAGTTAGGTTCTTCACGAAGATCTGCAT--TGTATTTTAT 4465584 >seq978 Length=8767375 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || || || | ||| |||||||||||||||||||||||| Sbjct 3246532 CCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGCA 3246591 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| || ||||| || ||| |||| | | ||||| || |||||| Sbjct 3246592 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGGG 3246651 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| || ||| |||| | || | || |||| | ||||| Sbjct 3246652 ATTCCTTCCTTATCTTGGATCTT-TGCTTTGACATTGTCGATGGTGTCGGAGCTCTCGAC 3246710 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| || || || ||||| |||||||| Sbjct 3246711 CTCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | |||||||||||| |||||||||||||| | |||||| ||| Sbjct 3246091 AGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCT 3246150 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||||||||| || | || || | ||||||||| || ||||| || || || || Sbjct 3246151 TCAAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATC- 3246209 Query 131143 GTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| ||| || || | | || | ||||| | ||||| || | |||| ||| Sbjct 3246210 TTGAATTTTGGCTTTCACGTTGTCAATGGTATCAGAACTCTCGACTTCCAGAGTAATGGT 3246269 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| || |||||||||||||| Sbjct 3246270 CTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 3246302 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | |||||| ||||| |||||||| || || | || ||| |||| Sbjct 3245863 AGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTATAGTCAGCAAGAGTACGCCCGTCC 3245922 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||||||||| || |||| || | ||||||||| || ||||| || || ||||| Sbjct 3245923 TCGAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC- 3245981 Query 131143 GTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| ||| || ||||| | || | ||||| | | ||| | || | |||| ||| Sbjct 3245982 CTGAATTTTTGCCTTGACATTGTCGATGGTATCAGAGCTCTCAACCTCCAGAGTAATGGT 3246041 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || | || || ||||| |||||||| Sbjct 3246042 CTTCCCTGTCAAGGTCTTCACGAAGATCTGCAT 3246074 >seq964 Length=1826015 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| || || | || ||||||||||| || ||||| || | ||||| || Sbjct 764060 CAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTGCGGCCATC 764119 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| ||||||||||| ||| |||| || | |||||| ||||| |||||||| || ||||| Sbjct 764120 CTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCCTCCTTGTC 764179 Query 131142 GGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 ||| ||| || ||| | | || | |||||| | | ||| | || | |||| || Sbjct 764180 -CTGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTCTCCACCTCAAGAGTAATGG 764238 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || ||||| | || || ||||| |||||||| Sbjct 764239 TCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 764272 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| |||||||| || |||||||||||| | Sbjct 764502 CCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 764561 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || | || || | ||||||||||||||| Sbjct 764562 AAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGA 764621 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||| | | || | || || | | ||| | Sbjct 764622 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTCTCCACC 764681 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || ||||| ||||| || ||||| || |||||| Sbjct 764682 TCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATG 764729 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || ||||| |||||||| || || | ||||||| |||| Sbjct 764289 AGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAGCAAGGGTGCGCCCGTCC 764348 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||||||||| || |||| || | ||||||||| || ||||| ||||| ||||| Sbjct 764349 TCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCTTCCTTGTC- 764407 Query 131143 GTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| ||| || || | | || | ||||| | ||||| || | ||| | ||| Sbjct 764408 TTGAATTTTAGCTTTCACATTGTCAATGGTATCAGAACTCTCGACCTCCAGGGTGATGGT 764467 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || ||||| |||||||| Sbjct 764468 CTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 764500 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || || || | |||||| |||||||||||||||||||| Sbjct 764958 CCTCCCCTCAAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCA 765017 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| |||||||| || || |||| | | |||||||| || || Sbjct 765018 AGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 765077 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | || |||| | ||||| Sbjct 765078 ATCCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCGGAGCTCTCGACC 765137 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || || || || || || || || |||||||| Sbjct 765138 TCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 765184 >seq959 Length=5381930 Score = 105 bits (116), Expect = 6e-18 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 131004 TGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 || |||||| || | ||| || || | || | || || ||||| || |||||||| || Sbjct 731838 TGCGCCACCACGAAGACGTAGAACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTC 731779 Query 131064 -GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCG 131122 ||| | ||| | ||| || |||||||| || ||| |||| | ||| |||||||||| Sbjct 731778 TGCT-AGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCG 731720 Query 131123 GAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACT 131182 | || || || || ||||| |||||| ||||| | || | || || | |||| Sbjct 731719 GTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACT 731660 Query 131183 CGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTT 131239 ||| || | ||| | || || || || || ||||| |||||||||||||| |||| Sbjct 731659 CGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT-ACTT 731604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007023743360