Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq977 104 2e-17 seq964 95.1 1e-14 seq959 87.8 1e-12 >seq977 Length=5547227 Score = 104 bits (114), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||||| || | ||| || || |||||||| || || ||||| || ||| Sbjct 1049762 CCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCC 1049703 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || |||| ||||| || || || ||| | || || ||||| || ||| ||| Sbjct 1049702 AAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 1049643 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885 | ||| || || || ||| |||| |||||| | | | | || || || |||| | Sbjct 1049642 ATGCCTTCCTTATCCTGAATCTTTGC--CTTCACGTTGTCTATTGTATC--CGAGCTCTC 1049587 Query 16886 GTT-TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||| ||| || || || || || || |||||||||||||| ||||| Sbjct 1049586 GACCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||||| || | ||| || || |||||||| || |||||||| || ||| Sbjct 1026075 CCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1026134 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || |||||||||| || || || ||| | || || ||||| || || ||| Sbjct 1026135 AAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGA 1026194 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| |||| |||||| | | | | || || | ||| Sbjct 1026195 ATCCCTTCCTTATCTTGAATCTTTGC--CTTCACGTTGTCTATCGTATCAGAGCTCTCGA 1026252 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || || || |||||||||||||| ||||| Sbjct 1026253 CCTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || ||||||| || | ||| || || ||||||||||| || || || ||||| Sbjct 1026302 CCCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGC 1026361 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | |||||||||| || || || || | || || | ||| |||||| ||| Sbjct 1026362 AAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGG 1026421 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| || || ||||| ||| || | | | | |||||| ||| Sbjct 1026422 AATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAAC 1026481 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || || ||||| || ||||||||||| |||||||| Sbjct 1026482 CTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||||| |||| ||| || || ||||||||||| || || || ||||| Sbjct 1049534 CCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1049475 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||||| || || || ||| | || || | ||| |||||| ||| Sbjct 1049474 AGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGA 1049415 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||||| ||| || | | | | ||||| ||| Sbjct 1049414 ATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACC 1049355 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || || ||||| || ||||| ||||| || ||||| Sbjct 1049354 TCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 >seq964 Length=1826015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || ||||||||||| || |||||||| ||||| Sbjct 764501 CCCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 764560 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | ||||||| || ||||| ||| |||| | || ||| |||||| ||| Sbjct 764561 CAAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGG 764620 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || ||| || | | | | ||||| | |||| Sbjct 764621 AATGCCCTCCTTATCCTGGATCTTGGC--CTTAACGTTGTCGATTGTGTCAGAGCTCTCC 764678 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || || ||||| || || ||||| || || ||||| Sbjct 764679 ACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 764728 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || |||||| |||| ||||| || ||||||||||| || |||||||| || Sbjct 764046 CCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 764105 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| || | || | || ||| || ||| || Sbjct 764106 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 764165 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||||| |||||| | | | ||| || | |||| Sbjct 764166 ATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTCTCCACC 764225 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | || ||||| || ||||||| || || || || ||||||||| Sbjct 764226 TCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATT 764273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| |||| || | || |||||||| Sbjct 763842 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCATCTTCCAATTGC 763901 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | | || ||||| || | ||||| ||||| |||| Sbjct 763902 TTACCAGCAAAGATCAATCTTTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATTTTA 763961 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | |||||| |||| |||| |||||||| ||||| ||| Sbjct 763962 GCCTTCACATTATCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTCTTTCCTGTC 764021 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||||||||||||| Sbjct 764022 AGGGTCTTCACAAAAATCTGCATT 764045 >seq959 Length=5381930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| |||||||||||||| || | |||| || |||| || | || Sbjct 731810 TGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTCGAGCTGC 731751 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || || || |||||| || | |||||| ||||| |||| Sbjct 731750 TTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTG 731691 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| | ||| || | |||||| || || || || Sbjct 731690 GCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTG 731631 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| ||||||||||| Sbjct 731630 AGGGTTTTGACGAAAATCTGCAT 731608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083166667210