Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq977 98.7 7e-16 seq978 93.3 3e-14 seq938 82.4 5e-11 >seq977 Length=5547227 Score = 98.7 bits (108), Expect = 7e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 38097 CTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACA 38156 ||||| | ||||||| ||| ||||| ||||| || || || ||||| | ||| Sbjct 917751 CTCAATCACAACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATCTG-CAAGTGT 917693 Query 38157 CGTTCG-TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCC 38215 | | | || || || ||||| || ||||| || || || || ||||| | || | ||| Sbjct 917692 CCTGCCATCTTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCC 917633 Query 38216 TTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAA 38275 |||||||||| ||| || ||| ||||| | | ||| || || ||||| || || Sbjct 917632 TTCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAA 917573 Query 38276 TGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || || ||||| || ||||| || ||||||||| Sbjct 917572 AGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCATG 917530 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | | ||| || | ||| || || |||||| |||||||||||||| | Sbjct 1049764 TACCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCG 1049705 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | |||| || || || || || ||||| || ||||| || ||||| | | Sbjct 1049704 CCAAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAG 1049645 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| ||| ||| |||||| || | | ||||| || || | Sbjct 1049644 GAATGCCTTCCTTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATCCGAGCTCTCGA 1049585 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || ||||| || | |||||| || || || ||||| Sbjct 1049584 CCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| | ||| | || | |||||||| ||||| || || || ||||||| Sbjct 1025618 ACCGCCTCTAAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTATAATCAGC 1025677 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | ||| | || || | ||| || || || || || || | || ||||| | || Sbjct 1025678 CAGAGTACGGCCATCTTCAAGTTGCTTCCCAGCGAAGATAAGCCTCTGCTGATCCGGAGG 1025737 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || |||||| ||| ||| |||||| || | | |||||| || ||||| Sbjct 1025738 AATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCTATGGTATCTGAGCTCTCAAC 1025797 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || ||||| ||||| |||||||||||||| Sbjct 1025798 CTCCAGCGTAATCGTCTTCCCGGTCAATGTTTTAACGAATATCTGCAT 1025845 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| |||| | ||| | || | ||| || ||| |||||| || ||||||||||| || Sbjct 1049991 ACCGCCTCGAAGACGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAATC-GA 1049933 Query 38150 C-AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || |||||||| || || || | |||||||| | || Sbjct 1049932 CTAGAGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGTTGATCAGGGG 1049873 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||| || |||||||| | | ||||| || || | Sbjct 1049872 GGATCCCCTCCTTGTCCTGAATCTTGGCTTTCACATTGTCTATGGTATCAGAGCTCTCCA 1049813 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | |||||| || || || ||||| || ||||| || |||||||| Sbjct 1049812 CCTCCAGTGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1049764 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || | ||||| || |||||| || ||||||||||||| | ||| | Sbjct 917289 CGCAAAACAAGGTGAAGTGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTACGACCA 917230 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||| || ||| |||| | | ||| ||||| | || | || || ||| Sbjct 917229 TCCTCCAGTTGTTTCCCCGCAGATATCAATCTTTGCTGATCTGGAGGAATCCCCTCCTTG 917170 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| ||||||| || ||||| | | |||||| ||||||||||| | || || Sbjct 917169 TCCTGAATTTTTGCTTTGACATTGTCAATTGTATCTGAGCTTTCAACTTCAAGAGTGATG 917110 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | ||| || ||||| | ||||| Sbjct 917109 GTCTTGCCTGTAAGGGTCTTAACGAAGACTTGCAT 917075 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | | ||| |||| ||||||||| ||||||||||||||| ||||| | Sbjct 1049536 TACCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGG 1049477 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || || || || || ||||| || || | || || || | | Sbjct 1049476 CAAGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAG 1049417 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| |||||| ||| ||||| | | || || || |||| Sbjct 1049416 GAATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAA 1049357 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | ||||| || || || || | ||||| || ||||| |||||| Sbjct 1049356 CCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCATG 1049307 >seq978 Length=8767375 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| ||| | ||||| || || || |||||||||||| |||||||| | Sbjct 3246530 TACCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATC-G 3246588 Query 38149 ACAAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | |||| || | ||| |||||||| || || || | ||| ||||| | Sbjct 3246589 GCAAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGA 3246648 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| || || || ||| || ||||| | || || || || || Sbjct 3246649 GGGATTCCTTCCTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCGGAGCTCTCG 3246708 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| || || || || | ||| |||||||| |||||||| Sbjct 3246709 ACCTCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 >seq938 Length=6919174 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG----GGTAATCTCGT 25956 |||||||||||||||| ||| |||||||| ||||||||| |||| | ||||| || Sbjct 6408684 TAAGCCCGTTCCCTTGAGTGTAGTTTCGCTGGATAGTAGACAGGGAAAATGGAATCTYGT 6408625 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 ||||| || ||| | ||||||||||||| Sbjct 6408624 TAATCAATTAATGTACATCACTAATTAGAT 6408595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943203556549