Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq940 176 5e-39 seq957 95.1 1e-14 seq454 91.5 2e-13 seq943 87.8 2e-12 seq954 86.0 7e-12 seq945 86.0 7e-12 seq976 82.4 9e-11 seq941 82.4 9e-11 >seq940 Length=8971605 Score = 176 bits (194), Expect = 5e-39 Identities = 397/594 (67%), Gaps = 11/594 (2%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | ||||||||| ||||| ||| | ||| || ||||| || || ||||| || Sbjct 8502682 TGTAGAGTAAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCG 8502623 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||| || ||||| || | || || |||||||| | ||||||||| | |||||| | Sbjct 8502622 AGAAGGTCAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGCGCAAAAACTCC 8502563 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGC 93258 | || || ||||| || || ||| ||||| || || | ||| || ||||| ||| | Sbjct 8502562 CCGAGAAGAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTC 8502503 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | | | ||||||| | ||||| | ||| || || | || ||||||| || Sbjct 8502502 CG-----CCGTCGATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGT 8502448 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || || |||| ||| || | |||||| | || || || | |||| || Sbjct 8502447 CTCCATTGCGTGAAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAA 8502388 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || |||||| || ||||| | || || || ||||||||||| |||||||| | Sbjct 8502387 GAGYCTATACATCTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACG 8502328 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | || ||| ||||||| |||| | ||||||| || || || || Sbjct 8502327 YGCCTCGGAGACCTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCC 8502268 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| || | || ||||| |||| | | | ||||| || ||| ||| | || Sbjct 8502267 ATCTGAGGKGGCGAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAG 8502208 Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || ||||| | || || || | || || ||||| || ||| ||||||| || || Sbjct 8502207 GTTTTCCCATTGACGCATG--TCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAG 8502150 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || |||||||| |||||||| ||||| || | | |||||||||||||| ||| Sbjct 8502149 GCCTCTGCTTTCTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACATG 8502096 >seq957 Length=6255442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 1722637 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 1722578 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT-TATT 126357 |||||||| || ||||| ||||||||| || |||| Sbjct 1722577 GTGGGTTCAAATCCCACTTCTGACAAATSATATATT 1722542 >seq454 Length=492528 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 420072 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 420013 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||||| || |||| Sbjct 420012 TGGGTTCAAATCCCACTTCTGACAATTTCCTATT 419979 >seq943 Length=11499313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 8583872 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 8583813 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 8583812 TGGGTTCAAATCCCACTTCTGACAA 8583788 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1271067 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1271126 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1271127 TGGGTTCAAATCCCACTTCTGACA 1271150 >seq954 Length=2400667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1234873 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1234932 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1234933 TGGGTTCAAATCCCACTTCTGACA 1234956 >seq945 Length=13627481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 669892 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTGACGAGGGCG 669833 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 669832 TGGGTTCAAATCCCACTTCTGACA 669809 >seq976 Length=16402300 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 7426831 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 7426772 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||||| | ||| || Sbjct 7426771 TGGGTTCAAATCCCACTTCTGACAAGTAATTTTT 7426738 >seq941 Length=10723577 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1852271 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1852328 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 1852329 TTCAAATCCCACAGCTGTCAATTT 1852352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853985415960