Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq938 116 8e-21 seq950 93.3 9e-14 seq948 93.3 9e-14 seq945 93.3 9e-14 seq941 93.3 9e-14 seq562 93.3 9e-14 seq426 93.3 9e-14 seq976 91.5 3e-13 >seq938 Length=6919174 Score = 116 bits (128), Expect = 8e-21 Identities = 202/289 (70%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || | ||||| ||||| || || || | ||| | || | || || || Sbjct 3922533 TGACTTTGTCAATAAGGAACTCATACTGTTTTCAATGGCGGATCTCCAGAGGTCCATACC 3922474 Query 218577 CAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG--CATTCAA 218633 | || |||| |||||||| ||||| || | ||||| ||||| | | | ||||| Sbjct 3922473 -ATCGATGGTTGATGGCCTGAAGCCGGGTCAAAGAAAGAT--TCTTTTCTGTTCCTTCAA 3922417 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | | ||| | || | ||| || || || ||||| ||||||||||| || || || Sbjct 3922416 GAGAAACTTTGTAAAGGAAGCAAAAGTAGCCCAGTTCTCTGGTTATGTTTCTGAGCACTC 3922357 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | |||||||| |||||||||||||| | | ||| | |||||||| ||||| | Sbjct 3922356 AGCTTACCATCATGGTGAGCAGAGTCTTGCCAGCACAATTATTGGCATGGCTCAGGATTT 3922297 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 ||| |||||||||||||| || | || | || || |||||||||||| Sbjct 3922296 TGTTGGCAGTAACAACATTAATCTTCTTCAACCAAATGGTCAGTTTGGT 3922248 >seq950 Length=8950308 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 8369094 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8369035 Query 142563 CCCCAC 142568 |||||| Sbjct 8369034 CCCCAC 8369029 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 7387961 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7388020 Query 142564 CCCAC 142568 ||||| Sbjct 7388021 CCCAC 7388025 >seq948 Length=7662486 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7063508 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7063449 Query 142563 CCCCAC 142568 |||||| Sbjct 7063448 CCCCAC 7063443 >seq945 Length=13627481 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1622911 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1622852 Query 142563 CCCCAC 142568 |||||| Sbjct 1622851 CCCCAC 1622846 >seq941 Length=10723577 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4960944 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4961003 Query 142563 CCCCAC 142568 |||||| Sbjct 4961004 CCCCAC 4961009 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7337430 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7337489 Query 142563 CCCCAC 142568 |||||| Sbjct 7337490 CCCCAC 7337495 >seq562 Length=5960891 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4710298 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4710239 Query 142563 CCCCAC 142568 |||||| Sbjct 4710238 CCCCAC 4710233 >seq426 Length=283601 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 46201 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 46142 Query 142563 CCCCAC 142568 |||||| Sbjct 46141 CCCCAC 46136 >seq976 Length=16402300 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 6320953 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6320894 Query 142564 CCCAC 142568 ||||| Sbjct 6320893 CCCAC 6320889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823907393339