Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq977 118 9e-22 seq964 100 2e-16 seq946 87.8 2e-12 seq959 84.2 2e-11 >seq977 Length=5547227 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || |||||||| | ||||| ||||| || || ||||| |||||||| Sbjct 1049765 ATACCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCC 1049706 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||||| | || || ||||| |||| || ||||| || |||||| Sbjct 1049705 GCCAAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGA 1049646 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||||| || | | || | || || | | ||| Sbjct 1049645 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATCCGAGCTCTCG 1049586 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||| || || || || ||||| |||||||| ||||| Sbjct 1049585 ACCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || ||||| || | ||| | || || || |||||||| || |||||| Sbjct 1026300 ATCCCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCG 1026359 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || | || || |||||| ||||||| | ||| ||||||||| Sbjct 1026360 GCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGA 1026419 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||| || || | | |||| ||||||| || Sbjct 1026420 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCA 1026479 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| |||||||| |||||||| ||||| |||||||| Sbjct 1026480 ACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||| ||||| || |||||| |||||||||||| || ||| Sbjct 1025649 GTCGATTCCTTCTGGATGTTATAATCAGCCAGAGTACGGCCATCTTCAAGTTGCTTCCCA 1025708 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || ||||||||||| || || ||||| ||||||| || Sbjct 1025709 GCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTC 1025768 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | | || || |||| || | ||| || ||||||| ||| Sbjct 1025769 ACGTTGTCTATGGTATCTGAGCTCTCAACCTCCAGCGTAATCGTCTTCCCGGTCAATGTT 1025828 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1025829 TTAACGAATATCTGCAT 1025845 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || ||||| || || ||||| ||||| | || | |||||||| || Sbjct 917734 ATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATCTTCAAACTG 917675 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 ||| ||||| | || |||||||| || || |||||||||||||||||||| |||||| Sbjct 917674 TTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTT 917615 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | |||| ||||||| | || || |||| || | || || || || Sbjct 917614 GGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCAGT 917555 Query 114359 CAGAGTTTTTACAAAAATCTGCATG 114383 || ||| || ||||| ||||||||| Sbjct 917554 CAAAGTCTTCACAAAGATCTGCATG 917530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || ||||| || | ||| | || || || |||||||| || |||||| Sbjct 1049537 ATACCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCG 1049478 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || | || || ||||| ||||||| | ||| ||||||||| Sbjct 1049477 GCAAGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGA 1049418 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||| || || | | |||| ||||| | || Sbjct 1049417 GGAATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCA 1049358 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||| |||||||| |||||||| ||||| || |||||| Sbjct 1049357 ACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCATG 1049307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/230 (69%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || || ||||| | ||| | ||||| || |||||||| |||||||| Sbjct 4466249 ATACCACCGCGGAGCCTTAAAACAAGATGCAAAGTAGACTCCTTTTGAATCTTGTAATCA 4466190 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || | || || || ||| | || | ||||||| || ||| Sbjct 4466189 CCCA----------ATCCTCCAACTGCTTTCCGGCGAAAATCAAGAGCTGTTGATCGGGA 4466140 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| |||||| || | | |||| | ||| | | ||| Sbjct 4466139 GGAATGCCTTCTTTGTCTTGAATCTTGGCCTTAACATTATCAATCGCGTCAGAGCTCTCG 4466080 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || ||||| || || || || ||||| ||||| || ||||| Sbjct 4466079 ACTTCCAACGTTACCGTCTTACCAGTTAGGGTTTTCACAAAGATTTGCAT 4466030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | ||| | || || | ||| | ||| || |||||||||||||| ||||| Sbjct 1025844 ATCCCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCC 1025903 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | || || ||||| |||| | | |||||||||||| Sbjct 1025904 GCCAGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGA 1025963 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||||| || | | |||| || || | ||| Sbjct 1025964 GGGATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCA 1026023 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 1026024 ACCTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| ||| || | ||||| || || ||||||||||||||||| || Sbjct 917076 ATTCCACCACGAAGTCGCAAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCA 917017 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| || |||||||| ||||| |||| | | || || || || Sbjct 917016 GCAAGGGTTCGACCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGT 916957 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| |||| |||| || || | || | |||||| | || Sbjct 916956 GGGATACCTTCCTTGTCTTGAATC-TTTGCCTTGGCATTATCGATGGTGTCAGAACTCTC 916898 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || | || || |||||||| |||| Sbjct 916897 AACCTCAAGCGTGATGGTCTTGCCTGTGATGGTCTTAACAAAAATTYGCAT 916847 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||||||||| || ||||| | || | || || ||||| |||||||||||||| || Sbjct 917458 ATCTTCAAGTTGCTTGCCAGCAAATATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTT 917399 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 || ||| ||| | |||| | | ||||| | || | | |||||| || | ||| | Sbjct 917398 GTTCTGAAT-TTTAGCTTTAACATTGTCAACTGCATCTGAGCTTTCGACTTCAAGGGTAA 917340 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || ||||| || ||||| ||||| || Sbjct 917339 TGGTTTTCCCAGTAAGAGTCTTCACAAAGATCTGTAT 917303 >seq964 Length=1826015 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || || || | || || || || || ||||||||||| Sbjct 764727 ATGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 764786 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| || || || |||||| | || | | ||| ||||| || Sbjct 764787 GCGAGAGTACGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGG 764846 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| || | | |||| |||||||| | || Sbjct 764847 GGAATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 764906 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||| || || || ||||| || ||||| Sbjct 764907 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 764956 >seq946 Length=5553863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||||||| || || | || ||||||||||| || || || ||| || |||||| Sbjct 333436 AGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATATTATAGTCGGCCAAAGTACGG 333495 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||| |||||||| | || || | ||| || || |||||||| |||||| Sbjct 333496 CCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATACCTTCT 333555 Query 114285 TTGTC 114289 || || Sbjct 333556 TTKTC 333560 >seq959 Length=5381930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || ||||| || || |||||||| || ||| | || | ||||| || || || || Sbjct 731804 GTGGATTCCTTCTGTATGTTGTAGTCTGCT-AGGGTTCTGCCGTCTTCGAGCTGCTTCCC 731746 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||||||||| || |||||||| |||||||| || ||||| || || || Sbjct 731745 GGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTT 731686 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | || ||||| || | ||| | || || || || || || Sbjct 731685 GACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGT 731626 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || ||||||||||| Sbjct 731625 TTTGACGAAAATCTGCAT 731608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129387140148