Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq977 100 2e-16 seq978 91.5 1e-13 >seq977 Length=5547227 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| || ||||||||| ||||||||||| ||||| || Sbjct 1026084 AGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTTCTG 1026143 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||| |||||||| ||||||||||||||||| || | | || Sbjct 1026144 CCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGAATCCCTTCC 1026203 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 || || ||| ||| ||| | | | |||||| || | ||| || | ||| Sbjct 1026204 TTATCTTGAATCTTTGCCTTCACGTTGTCTATCGTATCAG-AGCTCTCGACCTCCAACGT 1026262 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || ||||| ||||| ||||| |||||||| Sbjct 1026263 AATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || ||||||||||||||||||||| ||| || |||||||| ||||| ||| Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| ||||| ||||| || ||||| |||| | || || ||| || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | || || ||| ||| ||| ||| | | | | |||||| | ||| Sbjct 1025967 ATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACC 1026026 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 1026027 TCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || ||||| || || |||||||||||| |||||||| ||||| || Sbjct 1049753 AGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCCAAGGTTCTG 1049694 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||| || ||||| |||||||||||||||||| || | || || Sbjct 1049693 CCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCC 1049634 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 || ||| ||| ||| ||| | | | |||| | || | ||| || | || Sbjct 1049633 TTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATCCG-AGCTCTCGACCTCCAAGGT 1049575 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || ||||| ||||| ||||| |||||||| Sbjct 1049574 AATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 >seq978 Length=8767375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || |||| ||||| || ||||||||||||||||||||| || Sbjct 3246076 CCTCCCCTCAGCCTGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 3246135 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || ||| |||| || | ||||||||||||||||||| | |||||| || Sbjct 3246136 AGAGTG-CGCCCGTCTTCAAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTC 3246188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397057662425158