Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq940 122 2e-22 >seq940 Length=8971605 Score = 122 bits (134), Expect = 2e-22 Identities = 573/886 (65%), Gaps = 33/886 (4%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| | || || || || || | || ||||| ||||| ||||| |||| ||| Sbjct 8502092 TCTGCATGTTTCCAATTCAATACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCT 8502151 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAG-ACGT-CGTCGACTGGCGCGAG 242982 |||| ||||| ||||||| || ||||| | ||| || | |||| | ||| || Sbjct 8502152 CCTTCTGGACTGCCGAGGAGGTCGACCTCT---CCCAGGACATGCGTCAA-TGG---GAA 8502204 Query 242983 AAACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCC 243042 || |||| ||||| ||||| || || | | | |||| | |||||||| ||| Sbjct 8502205 AACCTCACCCCTGACGAGCGTCACTTTATTAGTCGCGTTCTGGCATTTTTCGCCMCCTCA 8502264 Query 243043 GATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGA 243101 ||||| || || |||| ||||| || | | | || | ||||| ||| | || Sbjct 8502265 GATGGCATCGTTTTGGAGAATCTCGCCGGACGA-TTCATGAAAGAAGTTCAGGTCTCCGA 8502323 Query 243102 GGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGC 243161 ||| || || || | | ||||| || |||| || ||||| || ||| Sbjct 8502324 GGCRCGTGCCTTCTACGGCTTCCAAATTGCCATCGAAAACATTCATTCCGAGATGTATAG 8502383 Query 243162 TCTTCTTATCGACGCGCTTATTTCAGATGAACAAGA-GCGAA--ACGAGCTTTTCGACGC 243218 || | |||| | || || || || | ||| | ||| || ||| || |||| Sbjct 8502384 RCTCTTGCTCGAGTC-CTARATTAAG--GACCCAGACGAGAAGCACAGGCTCTTTCACGC 8502440 Query 243219 CATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGC--TCAGAAGTGGCTAGAA 243276 || || | ||| || ||| | || ||||| || ||||| || || ||| | || Sbjct 8502441 AATGGAGACCATACCTTGCGTTGAAAAGAAGGCCAAGTGGGCCCTCCGA--TGGATCGAC 8502498 Query 243277 CCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTT 243336 ||| |||||||||| |||||| | ||||||| | ||||| || || || | || Sbjct 8502499 GGCGGAGAATCATTTGCGGAGCGTTTGGTCGCCTTTGCTTGCGTCGAGGGGATATTCTTC 8502558 Query 243337 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 243396 || |||||||| ||||| || |||||| | ||| || | ||||| || | Sbjct 8502559 TCGGGGAGTTTTTGCGCGATATTTTGGTTAAAGAAACGCGGGCTAATGCCCGGTTTGACC 8502618 Query 243397 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATG 243456 | || |||||||| ||| || || ||||| || || | |||| | ||||| Sbjct 8502619 TTCTCGAACGAGTTAATCTCGCGAGATGAGGGTCTCCATTGTGACTTCGC-GTGCTTAC- 8502676 Query 243457 TATTCAAAGCTCCAGAACAAGCTACCATTCGAA-ACGG--TCAAACAAATCATCACAGAA 243513 | | || |||| || | | ||| || | ||| | |||| | | || Sbjct 8502677 TCTACAGT-CTCCTGAGGATGAAGTTGAGCGAGGACCGAATCAGAGGAATCGTTGCGGAT 8502735 Query 243514 GCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATG 243573 ||||| || | || | ||||||| | |||||||| | || ||| ||| | |||||| Sbjct 8502736 GCAGTGGATATAGAGAGGGAATTCGTATGCGACGCGCTGCCGTGCGCGCTGGTGGGCATG 8502795 Query 243574 AACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTT 243633 ||| ||| || ||| | ||||||| ||||| ||||| ||| | | || ||| | Sbjct 8502796 AACGGTGACCTAATGAGTAAGTACATTGAATTTGTAGCAGACAGATTACTCGGCGCTTTA 8502855 Query 243634 GGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTT 243693 || || | ||| |||| || ||||||| || | | |||||||| ||| |||| Sbjct 8502856 GGCTACGGTAAAATGTATAATGTTCAGAACCCGTTCGATTGGATGGAGCTGATTA-GCTT 8502914 Query 243694 -CAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || ||||| || ||||||||||| ||| | ||| | || |||||| Sbjct 8502915 GCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTCGGAGAATATCAA 8502960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102866166093650