Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq964 120 3e-22 seq977 116 4e-21 seq937 89.7 6e-13 seq978 86.0 7e-12 >seq964 Length=1826015 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||||||| | || |||||| |||| ||| ||||||||| |||||||| ||||| Sbjct 764046 CCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 764105 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| |||||||| || | | |||||| || | ||| Sbjct 764106 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 764165 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| |||||| || | | | | || || |||| || Sbjct 764166 ATTCCCTCCTTGTCC-TGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTC---TC 764221 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || | || ||||| || || || | ||||| || ||||| |||||| Sbjct 764222 CACCTCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATT 764273 Score = 100 bits (110), Expect = 3e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| || || ||||||||||| ||||| || | || || Sbjct 764747 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTACGACCATCTTC 764806 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || | | ||||||||| | || | || ||||| ||| | Sbjct 764807 CAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC-T 764865 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | || | |||| | | | ||||| |||| || || || | ||||||| Sbjct 764866 GAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGG 764922 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || ||||| |||||||||||||| Sbjct 764923 TCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 764956 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| |||||| || || |||||||| |||| ||| || | Sbjct 764513 ACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGACC 764572 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || | | ||||||||| | || | || |||||| Sbjct 764573 YTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTT 764632 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| ||| || || | ||| | | | ||||| |||| ||||| || | | Sbjct 764633 ATCCTGGATCTTGGCCTTAA-CGTTGTCGATTGTGTCAGAGCTC---TCCACCTCCAAGG 764688 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || || ||||| || ||||||||||| Sbjct 764689 TGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 764728 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||||||| || | || || | ||||||||||| || Sbjct 763853 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAA 763912 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || |||||||||| || | | |||||||||| |||||| || | | Sbjct 763913 GATCAATCTTTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATT 763972 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| ||| ||||| || | |||||||| || || || || ||||| Sbjct 763973 ATCAATTGTGTCGGAACTC---TCCACCTCCAAAGTGATGGTCTTTCCTGTCAGGGTCTT 764029 Query 42194 TACAAAGATTTGCATT 42209 ||||| || |||||| Sbjct 764030 CACAAAAATCTGCATT 764045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || ||||| | ||||| || | || ||||||||||| ||||||||||| Sbjct 764957 ACCTCCCCTCAAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGC 765016 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || |||||||| || || || || || | |||||||| | || Sbjct 765017 AAGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGG 765076 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||| || ||| ||| || | | | | ||||| |||| || Sbjct 765077 AATCCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCGGAGCTC---TC 765133 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || || || || || || || ||||| |||||||| ||||| Sbjct 765134 GACCTCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 765184 >seq977 Length=5547227 Score = 116 bits (128), Expect = 4e-21 Identities = 148/197 (75%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||||||||| ||||| || ||||| || |||| || | |||||| |||||||| Sbjct 1026338 CTCCTTTTGAATATTATAATCGGCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAA 1026397 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||| ||||||||| | || | || |||||| | | ||| |||| | |||| || Sbjct 1026398 GATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTAT-CTTGAATTTTAGCCTTGA-CG 1026455 Query 42136 TCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | ||||||| ||| || || || | || || || ||||| ||||| || Sbjct 1026456 TTGTCAATCGTGTCGGAACTC---TCAACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTT 1026512 Query 42192 TTTACAAAGATTTGCAT 42208 || |||||||| ||||| Sbjct 1026513 TTGACAAAGATCTGCAT 1026529 Score = 104 bits (114), Expect = 3e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| |||| ||| | || ||||||||||||||| ||||| || ||||| || |||| Sbjct 1049520 CAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTC 1049461 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || | |||||| ||||| || ||||||| ||||||||| | || | | |||||| || Sbjct 1049460 CTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATC 1049401 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| |||| | |||| | | | |||||| || || || | || || | Sbjct 1049400 C-TGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCG 1049342 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| ||||| || || ||||| |||||||| Sbjct 1049341 TCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| || ||||| || || ||||| |||| || || || || || ||||| Sbjct 1026566 CTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAA 1026625 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || |||||||| |||| || | || ||||||||| ||| || |||| | Sbjct 1026626 GATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 1026685 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || ||| ||| || || |||| ||||||||||| || ||||| || || Sbjct 1026686 ATCGATGGTATCGGAACTC---TCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTT 1026742 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 1026743 CACAAAGATCTGCAT 1026757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||| ||||| ||||| ||| | ||| ||| |||||||| || ||||| ||| Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || | |||||| ||||| || || | || || ||||| | || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| ||| ||| | ||||| |||| | | | || || ||| || Sbjct 1025967 ATCCCTTCCTTATCC-TGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAAC 1026025 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || || || || |||||||| ||||| Sbjct 1026026 CTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | || | ||| |||||| || |||||||||||||| || || || | Sbjct 917289 CGCAAAACAAGGTGAAGTGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTACGACCA 917230 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || || || || || |||| | || ||||| || | || | | ||||||| Sbjct 917229 TCCTCCAGTTGTTTCCCCGCAGATATCAATCTTTGCTGATCTGGAGGAATCCCCTCCTTG 917170 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| |||||| ||||| | | | || || ||| ||| || || | || Sbjct 917169 TCC-TGAATTTTTGCTTTGACATTGTCAATTGTATCTGAGCT---TTCAACTTCAAGAGT 917114 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||| ||||| || || ||||| || |||| ||||||| Sbjct 917113 GATGGTCTTGCCTGTAAGGGTCTTAACGAAGACTTGCATT 917074 >seq937 Length=9237706 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || ||||| || || || | | || || ||||||||||| ||||| Sbjct 196062 CTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCGAGCTGCTTACCGGCGAA 196003 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || |||||||| || | ||| | || ||||| || ||| || |||| | Sbjct 196002 GATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTAGCCTTGACATT 195943 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | || ||||| || |||||||| || || || Sbjct 195942 GTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTACCCGTTAGGGTTTTCAC 195883 Query 42197 AAAGATTTGCATTTTCACG 42215 ||||| ||||| ||| || Sbjct 195882 GAAGATCTGCATCTTCGCG 195864 >seq978 Length=8767375 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||| ||| |||| || |||||||| || || || Sbjct 3246111 CTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAA 3246170 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| | | ||||||||| | ||| | | |||||| | | ||| |||| | || ||| Sbjct 3246171 TATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTAT-CTTGAATTTTGGCTTTCACGT 3246229 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| || || || | || ||||| || || || || |||| Sbjct 3246230 TGTCAATGGTATCAGAACTC---TCGACTTCCAGAGTAATGGTCTTTCCAGTGAGAGTCT 3246286 Query 42193 TTACAAAGATTTGCAT 42208 | || || || ||||| Sbjct 3246287 TCACGAAAATCTGCAT 3246302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | ||| | ||||| || | || |||||||||||| |||||||| || Sbjct 3246531 ACCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGC 3246590 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| |||| || || ||||| || ||||| || || | ||||| || | || Sbjct 3246591 AAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGG 3246650 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||| || ||| ||| ||||| | | | ||||| |||| || Sbjct 3246651 GATTCCTTCCTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCGGAGCTC---TC 3246707 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || || || || || || || ||||| || ||||| ||||| Sbjct 3246708 GACCTCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206152433360