Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq977 107 2e-18 seq978 98.7 1e-15 seq964 98.7 1e-15 seq959 87.8 2e-12 >seq977 Length=5547227 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | |||||||| |||||||| || ||| Sbjct 1026531 CCACCACGGAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCT 1026590 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||||||| |||| ||||||| ||||| || || ||||| Sbjct 1026591 AGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 1026650 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||| |||| ||| ||| Sbjct 1026651 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCGACC 1026710 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || || ||||| ||||| |||||||| Sbjct 1026711 TCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 138380 AGCCGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGT 138439 ||| ||| |||||||| | ||| | || | ||| | | | |||||||| || || |||| Sbjct 1049998 AGCAGCAACCGCCTCGAAGACGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGT 1049939 Query 138440 AGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGT 138499 | ||| | ||| ||| ||||| || || || |||| |||| || | |||||| | Sbjct 1049938 AATCGACTAGAGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGTTGAT 1049879 Query 138500 CCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGT 138557 | || || || || || ||||| ||| | || | ||| | |||| | | ||| || | Sbjct 1049878 CAGGGGGGATCCCCTCCTTGTCC-TGAATCTTGGCTTTCACATTGT-CTATGGTATCAGA 1049821 Query 138558 CGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| | || | || || ||||||| || || |||||||||||||| Sbjct 1049820 GCTCTCCACCTCCAGTGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1049764 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| || || ||| | |||||| |||||| | || || || | Sbjct 1026336 GACTCCTTTTGAATATTATAATCGGCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCG 1026395 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||||||||| || || || || || ||| |||| | || | Sbjct 1026396 AAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTATC-TTGAATTTTAGCCTTGAC 1026454 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||| ||||| | || | ||| || || || ||||||| Sbjct 1026455 GTTG-TCAATCGTGTCGGAACTCTCAACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTT 1026513 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 1026514 TGACAAAGATCTGCAT 1026529 >seq978 Length=8767375 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || || || | | |||||||||||||||||||||| ||| Sbjct 3246532 CCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGCA 3246591 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||||||||| || |||| |||| || | || || || ||||| Sbjct 3246592 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGGG 3246651 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| ||| ||| | |||| || | |||||||| ||| || Sbjct 3246652 ATTCCTTCCTTATCTTGGATCTTTGCTTTGACATTG-TCGATGGTGTCGGAGCTCTCGAC 3246710 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || || || || || |||||||| Sbjct 3246711 CTCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || || || | | | || ||||| || |||||||||||| Sbjct 3246304 CCACCTCTCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 3246363 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||| || |||| | |||| || | ||| ||||| || || Sbjct 3246364 AGAGTGCGACCGTCCTCGAGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3246423 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || || || ||| | |||| || | |||||||| ||| || Sbjct 3246424 ATTCCTTCCTTATCCTGTATCTTGGCTTTGACATTG-TCAATGGTGTCGGAGCTCTCAAC 3246482 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || ||||| || ||||| Sbjct 3246483 TTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 3246530 >seq964 Length=1826015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | ||| || || | | | || ||||||||||||||||| || Sbjct 764958 CCTCCCCTCAAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCA 765017 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||||||| || || |||| | |||| || | || ||||| || || Sbjct 765018 AGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 765077 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| ||| || | |||| || | |||||||| ||| || Sbjct 765078 ATCCCTTCCTTATCTTGGATCTTTGCCTTAACATTG-TCTATGGTGTCGGAGCTCTCGAC 765136 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| || || || ||||| |||||||| Sbjct 765137 CTCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 765184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | || | | | |||||||| || ||||||||||| Sbjct 763817 GCCACCGCGAAGACGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 763876 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| || || | ||| ||||| | | |||| | | || ||||| || || Sbjct 763877 CAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGGTCGGGGGG 763936 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| |||||| || | | || | ||||||| |||||| Sbjct 763937 AATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATTGTGTCGGAACTCTCCAC 763996 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || ||||| || || |||||||||||||| Sbjct 763997 CTCCAAAGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAATCTGCAT 764044 >seq959 Length=5381930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| ||| | || | ||| ||||| || || |||| Sbjct 731801 GATTCCTTCTGTATGTTGTAGTCTGCT-AGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGC 731743 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 |||| ||||| || |||||||| || || || || ||||| |||||| || | Sbjct 731742 GAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGAC 731683 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | |||||| | ||||| ||||| | || | || || || || || |||| Sbjct 731682 ATTGT-CGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTT 731624 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 731623 TGACGAAAATCTGCAT 731608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256326988880