Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq977 116 3e-21 seq978 105 5e-18 seq964 91.5 1e-13 seq959 91.5 1e-13 >seq977 Length=5547227 Score = 116 bits (128), Expect = 3e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || ||||| | ||| |||||||| || || || || |||||||| || Sbjct 1049762 CCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCC 1049703 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| ||||||| || || || ||||| | |||| ||||| || || || Sbjct 1049702 AAGG-TTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGG 1049644 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| |||||||| || ||| ||||| || || | ||||| ||||| | || | Sbjct 1049643 AATGCCTTCCTTATCCTGAATCTTTGCCTTC-ACGTTGTCTATTGTATCCGAGCTCTCGA 1049585 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||||||| || ||||| || || ||||| ||||||||||||||| Sbjct 1049584 CCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATA 1049535 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||||| | || |||| ||| || || || || || || ||||| || Sbjct 917531 TGCCACCCCTCAATCGCAGCACCAAATTAAGAGTTGATTCCTTCTGAATTTTGTAGTCAG 917472 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || |||||| | ||||| | ||| |||||||| ||||||| || || ||||| | Sbjct 917471 CAAGGATTCTCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAGCGTTGCTGGTCTGGAG 917412 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||||| |||||| ||| ||| | || | | ||| |||| | Sbjct 917411 GAATGCCTTCCTTGTTCTGAATTTTAGCTTTAACATTGTCAACTGCATCTGAGCTTTCGA 917352 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||||||||| || || ||||| || ||||| || || || Sbjct 917351 CTTCAAGGGTAATGGTTTTCCCAGTAAGAGTCTTCACAAAGATCTGTAT 917303 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || |||||||| ||||| ||||| || ||| ||||||| || || Sbjct 1025870 ATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCCAGGGTTCGGCCGTCTTCCAACTG 1025929 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | |||||||| || || |||||||| || ||| || Sbjct 1025930 CTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTT 1025989 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || |||||||| | |||| || || | || ||||||||||| || Sbjct 1025990 TGTCTTGACATTATCAATAGTATCAGAACTTTCAACCTCAAGTGTGATGGTTTTACCGGT 1026049 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||| || |||||| Sbjct 1026050 GAGGGTTTTGACAAAGATCTGCATA 1026074 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCT 15008 ||||| || | || || || | ||||||||| || || || || |||||||||| ||| Sbjct 1026075 CCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1026134 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| |||| || || || || || || | |||| ||||| || || || Sbjct 1026135 AAG-GTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGG 1026193 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| |||||||| || ||| ||||| || || | ||||| ||||| | || | Sbjct 1026194 AATCCCTTCCTTATCTTGAATCTTTGC-CTTCACGTTGTCTATCGTATCAGAGCTCTCGA 1026252 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| || || ||||| |||||||||||||| Sbjct 1026253 CCTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || ||||| ||||| || | || | ||||| || || Sbjct 917734 ATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATCTTCAAACTG 917675 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| |||||| || || ||||| ||||| ||||| ||| || Sbjct 917674 TTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTT 917615 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || ||||| ||| | || || || || |||||||| || || || Sbjct 917614 GGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCAGT 917555 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||| || ||||| || ||||| Sbjct 917554 CAAAGTCTTCACAAAGATCTGCAT 917531 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || || || || ||||| |||||| || | | |||| || Sbjct 1026548 AACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTC 1026607 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||||||| ||| | || | ||||| || ||| || || || |||||||| Sbjct 1026608 GAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTG 1026667 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || |||||| | | || || || | || |||||||| Sbjct 1026668 GATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTT 1026727 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| ||||| || ||||| Sbjct 1026728 ACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 >seq978 Length=8767375 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || || || ||||||||||| ||| | | | ||||||| Sbjct 3246093 AACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTC 3246152 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || ||||||| | ||| ||||| ||| || || ||||| || Sbjct 3246153 AAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTG 3246212 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| ||| || | || || ||||| | | || || || | |||||||| || Sbjct 3246213 AATTTTGGCTTTCACGTTGTCAATGGTATCAGAACTCTCGACTTCCAGAGTAATGGTCTT 3246272 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || ||||| |||||| Sbjct 3246273 TCCAGTGAGAGTCTTCACGAAAATCTGCATA 3246303 >seq964 Length=1826015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || || || ||||| || || || || ||||||||||| Sbjct 764728 TGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 764787 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| | || || |||||| | ||||| | ||| ||||| | Sbjct 764788 CGAGAGTACGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGG 764847 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || ||| || || ||| | || || || ||| | || | Sbjct 764848 GAATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 764907 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || || || || || ||||| ||||||||| Sbjct 764908 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCATA 764957 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | |||||| | || || |||||||| || || || || ||||| || || Sbjct 764274 CCTCCCCTCAATCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAGCA 764333 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||| || | || ||||| || | ||||| | ||| ||||| ||| Sbjct 764334 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 764393 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||| ||| | || || ||||| | | || || Sbjct 764394 ATACCTTCCTTGTCTTGAATTTTAGCTTTCACATTGTCAATGGTATCAGAACTCTCGACC 764453 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || || || || || || || ||||| Sbjct 764454 TCCAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 764500 >seq959 Length=5381930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GC 15007 |||||| || | | || ||| | ||||| || || || || ||||||||||| || || Sbjct 731835 GCCACCACGAAGACGTAGAACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGC 731776 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | || || || ||| | || | ||| || ||||| || Sbjct 731775 T-AGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTG 731717 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| |||||| || ||| | || || || || | || | Sbjct 731716 GAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGA 731657 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || | ||| || || || || || || ||||| || ||||| |||||| ||| || Sbjct 731656 CCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATACTTGGAA 731600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357387735755015