Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq977 161 9e-35 seq964 109 5e-19 seq959 93.3 4e-14 seq978 87.8 2e-12 seq946 86.0 6e-12 >seq977 Length=5547227 Score = 161 bits (178), Expect = 9e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||||||| || ||||| || || || |||||||| |||||||||||| Sbjct 1026300 ATCCCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCG 1026359 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||| || || || ||| | || | || ||||||||||| Sbjct 1026360 GCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGA 1026419 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || |||||||||||||| |||| || | || | ||||||||| ||| Sbjct 1026420 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGA-CGTTGTCAATCGTGTCGGAACTCTC 1026478 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||| ||||||||||||||||| ||||| || ||||| Sbjct 1026479 AACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||||||| || ||||| || || || |||||||| |||||||||||| Sbjct 1049537 ATACCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCG 1049478 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| || || || || | || | || ||||||||||| Sbjct 1049477 GCAAGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGA 1049418 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| |||||||| |||| || | ||||| ||| ||| Sbjct 1049417 GGAATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCA 1049358 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||| ||||||||||||||||| ||||| |||||||| Sbjct 1049357 ACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 1026072 ATACCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 1026131 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | || ||||| || || || || | |||| || ||||| || || Sbjct 1026132 GCCAAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGA 1026191 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||||||||| ||| || | || | |||| || || || ||| Sbjct 1026192 GGAATCCCTTCCTTATCTTGAATCTTTGCCTTCA-CGTTGTCTATCGTATCAGAGCTCTC 1026250 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || | |||| ||| || || ||||| ||||| ||||||||||||||| Sbjct 1026251 GACCTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATC 1026302 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 1049765 ATACCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCC 1049706 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | || ||||| || || || || | |||| || ||||| ||||| Sbjct 1049705 GCCAAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGA 1049646 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| ||||| ||||| ||| || | || | |||| || || || ||| Sbjct 1049645 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCA-CGTTGTCTATTGTATCCGAGCTCTC 1049587 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | |||| ||| || || ||||| ||||| |||||||||||||| Sbjct 1049586 GACCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 114 bits (126), Expect = 1e-20 Identities = 163/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||||||||| || || ||||||| || || |||||||| || || ||||| Sbjct 4466249 ATACCACCGCGGAGCCTTAAAACAAGATGCAAAGTAGACTCCTTTTGAATCTTGTAATCA 4466190 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | ||| ||||| || ||||| ||| | ||||| | || || || || Sbjct 4466189 CCCA----------ATCCTCCAACTGCTTTCCGGCGAAAATCAAGAGCTGTTGATCGGGA 4466140 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| |||||||| || || | || | | ||| || |||| Sbjct 4466139 GGAATGCCTTCTTTGTCTTGAATCTTGGCCTTAACATTATCAATCGCGTCAGAGCTCTCG 4466080 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 4466079 ACTTCCAACGTTACCGTCTTACCAGTTAGGGTTTTCACAAAGATTTGCATC 4466029 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || ||||| || || || ||||| || || ||||||||| Sbjct 1049309 ATGCCCCCGCGGAGTCGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCG 1049250 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || || | ||| || || ||| | || | || ||||| || || Sbjct 1049249 GCGAGCGTCCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGATCTGGA 1049190 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || |||||||| || || |||| || | ||| || ||| |||| Sbjct 1049189 GGAATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATGGTATCAGAACTCTCG 1049130 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || ||||||||||| ||||| ||||||||||||||| Sbjct 1049129 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATTTGCATC 1049079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | ||| || ||||| | || || || ||||| || || || || Sbjct 917076 ATTCCACCACGAAGTCGCAAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCA 917017 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| |||| |||||| || || | ||||||| |||||| || || Sbjct 917016 GCAAGGGTTCGACCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGT 916957 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||||||| ||| ||| || | |||||| ||| ||| Sbjct 916956 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTGGCATTATCGATGGTGTCAGAACTCTCA 916897 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || | || || ||||||||| |||| Sbjct 916896 ACCTCAAGCGTGATGGTCTTGCCTGTGATGGTCTTAACAAAAATTYGCAT 916847 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| |||| || ||||||||||| ||||| |||||||| | || | ||| Sbjct 917743 CAACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATC 917684 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || || ||||| || || | |||| || ||||| || || |||||||||||||| || Sbjct 917683 TTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTC 917624 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||| || |||| || | |||||||| ||| || || | ||||| || Sbjct 917623 CTGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATGGT 917564 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| || ||||| Sbjct 917563 CTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 917531 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| | || || ||||||||||| || || || || || | | || | ||| Sbjct 917515 CAGCACCAAATTAAGAGTTGATTCCTTCTGAATTTTGTAGTCAGCAAGGATTCTCCCATC 917456 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | ||| || || || ||||||| ||||||||||| || ||||||||||| || | Sbjct 917455 TTCAAGTTGCTTGCCAGCAAATATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTGTT 917396 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 |||||||| ||| | || || | || || |||||||| || |||| || Sbjct 917395 CTGAATTTTAGCTTTAACATTGTCAACTGCATCTGAGCTTTCGACTTCAAGGGTAATGGT 917336 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || ||||| || ||||| || || ||| Sbjct 917335 TTTCCCAGTAAGAGTCTTCACAAAGATCTGTATC 917302 >seq964 Length=1826015 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | || || || || ||||| ||||| || ||||| Sbjct 764727 ATGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 764786 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| |||| || ||||| ||| | ||||| | |||||||| || Sbjct 764787 GCGAGAGTACGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGG 764846 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| ||||| || |||| || | ||||||||| ||| Sbjct 764847 GGAATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 764906 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| || || || ||||| |||||||| Sbjct 764907 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 764956 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | ||| | || || | || Sbjct 764982 TGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCAAGAGTTCTGCCGTCCTCGAGCTGC 765041 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | |||| | ||||||||| || ||||| ||||| |||||||| || ||| Sbjct 765042 TTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATCTTT 765101 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| ||||||||| |||||| |||||||||| || || || || Sbjct 765102 GCCTTAACATTGTCTATGGTGTCGGAGCTCTCGACCTCGAGAGTAATTGTCTTTCCAGTA 765161 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || |||||| Sbjct 765162 AGGGTCTTAACAAAGATCTGCATC 765185 >seq959 Length=5381930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190 || || || || || |||||||| || || || || || ||| | |||| | || || Sbjct 731816 ACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGCT-AGGGTTCTGCCGTCTTC 731758 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | |||||||||||||| |||||||| || || || || Sbjct 731757 GAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTG 731698 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| |||| || | |||||| ||||||||||| || || || | || || Sbjct 731697 GATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTT 731638 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| ||||| Sbjct 731637 CCCCGTGAGGGTTTTGACGAAAATCTGCAT 731608 >seq978 Length=8767375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || || ||||||| | |||||||| || || || || || |||||||||||| Sbjct 3246157 TGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGAATT 3246216 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || ||| | || | || | ||| || ||| ||||||||| ||||||| || || || Sbjct 3246217 TTGGCTTTCA-CGTTGTCAATGGTATCAGAACTCTCGACTTCCAGAGTAATGGTCTTTCC 3246275 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || ||||| ||||| Sbjct 3246276 AGTGAGAGTCTTCACGAAAATCTGCAT 3246302 >seq946 Length=5553863 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | ||||||||| || | || || |||||||| |||||||||||||| ||| Sbjct 333425 TTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATATTATAGTCGG 333484 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || ||| |||||||| || || || | |||| || ||||| || || | Sbjct 333485 CCAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAG 333544 Query 45232 GAATGCCTTCTTTATCTTGA 45251 |||| |||||||| || ||| Sbjct 333545 GAATACCTTCTTTKTCCTGA 333564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997668610840