Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq940 111 2e-19 seq957 86.0 8e-12 >seq940 Length=8971605 Score = 111 bits (122), Expect = 2e-19 Identities = 305/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||||| ||||||||||||||| |||||||| | | ||| || |||||| Sbjct 8502956 TATTCTCCGACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAAGCTAATCAGCTCCATC 8502897 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGACG 127350 |||| || ||||||| || | ||| | | | || || | ||| | | Sbjct 8502896 CAATCGAACGGGTTCTGAACATTATACATTTTACCGTAGCCTAAAGCGCC-GAGTAATCT 8502838 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 || | || | |||||||||| | ||| ||| |||||| || | || || Sbjct 8502837 GTCTGCTACAAATTCAATGTACTTACTCATTAGGTCACCGTTCATGCCCACCAGCGCGCA 8502778 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG-T 127469 || |||||||| | | ||| || |||| || ||||| || ||| ||||| | | Sbjct 8502777 CGGCAGCGCGTCGCATACGAATTCCCTCTCTATATCCACTGCATCCGCAACGATTCCTCT 8502718 Query 127470 GAATAGTGTCCACCC-CAGGTCTATTGCGTAA--AGTCTTGAAGAGTTC-CACAGCAAAC 127525 || | | |||| | | || | || | | | || || | ||||| ||| || || Sbjct 8502717 GATTCG-GTCCTCGCTCAACTTCAT--CCTCAGGAGACT-GTAGAGTAAGCAC-GCGAAG 8502663 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||||||||||| || || ||||| | || ||||||||| || ||| ||||| Sbjct 8502662 TCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTCAAACCGGGCATT 8502603 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || || ||||| ||||| || ||||| ||||| || |||||||| |||||||| Sbjct 8502602 AGCCCGCGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCCTCG 8502543 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || || || || | | |||||| ||||| || Sbjct 8502542 ACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGA 8502508 >seq957 Length=6255442 Score = 86.0 bits (94), Expect = 8e-12 Identities = 187/279 (67%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||| |||||||| || ||||| || |||||||| | |||||||| | Sbjct 5581966 GAAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATTTCCA-- 5581909 Query 12851 CATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | | || || | | |||| | || || || ||||| || ||||| || || || Sbjct 5581908 CCTCCAAGCCCTGCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCAATAAATACAATR 5581849 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || || || | || ||||| | ||| | |||||| || || |||||| Sbjct 5581848 CAAGGGGCCTTAGCCTTTGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACACCC 5581789 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| ||||||||| | | || | ||| | ||| || || || ||||| Sbjct 5581788 ACAAACAACTCCACAAATTCTGAAGCTGCACAGGAAAAGAATGGCACACCGGCCTCACCG 5581729 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | |||| || | ||||| |||||||| || ||| Sbjct 5581728 GCAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGGT 5581690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499692205640