Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq964 125 8e-24 seq977 105 8e-18 seq937 104 3e-17 seq959 93.3 5e-14 seq978 89.7 6e-13 >seq964 Length=1826015 Score = 125 bits (138), Expect = 8e-24 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||||||| | || ||||| |||| |||| ||||||||||||||||||||| | Sbjct 764046 CCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 764105 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || |||||||||||||| ||||| ||||| | |||||| || | || Sbjct 764106 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 764165 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||||| || || ||| | | | | || || |||| ||| Sbjct 764166 ATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTC---TCC 764222 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | || ||||| || || |||| || || || ||||| |||||| Sbjct 764223 ACCTCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATT 764273 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| | |||||| | || || ||||||||||| || || Sbjct 764537 CTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAA 764596 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || |||||| ||| |||||| ||| | ||| Sbjct 764597 AATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTT-AACGT 764655 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| ||||| || ||||| || || || | Sbjct 764656 TGTCGATTGTGTCAGAGCTC---TCCACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTCT 764712 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 764713 TGACGAAGATTTGCAT 764728 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||||| || | || || |||||||| || ||||| Sbjct 764765 CTCCTTCTGGATGTTGTAATCAGCGAGAGTACGACCATCTTCCAGCTGCTTTCCAGCGAA 764824 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||| ||| ||||| ||||| | Sbjct 764825 AATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGAATCTTAGCCTTGACATT 764884 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| || || |||| |||||||| || || || || || || Sbjct 764885 GTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTT 764941 Query 46579 AACAAAGATTTGCAT 46593 ||||||||||||||| Sbjct 764942 AACAAAGATTTGCAT 764956 >seq977 Length=5547227 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || || || |||| ||| || || |||| ||||| || ||||||||||| Sbjct 1026566 CTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAA 1026625 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| |||| || | || ||||||||| |||||| ||||| | Sbjct 1026626 GATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 1026685 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || ||| ||| || || || | ||||||||||| || || || ||||| Sbjct 1026686 ATCGATGGTATCGGAACTC---TCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTT 1026742 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 1026743 CACAAAGATCTGCAT 1026757 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || || || |||| || || || |||| ||||| |||||||||||||| Sbjct 1049271 CTCCTTCTGAATGTTATAATCGGCGAGCGTCCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1049212 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | | |||||| || |||||| ||||| | Sbjct 1049211 AATGAGGCGCTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATCTTAGCCTTGACATT 1049152 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || ||| || || || | |||||||| ||||| || || ||||| Sbjct 1049151 ATCAATGGTATCAGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1049095 Query 46579 AACAAAGATTTGCATTTTG 46597 ||||| |||||||| ||| Sbjct 1049094 CACAAAAATTTGCATCTTG 1049076 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| |||||||| | || ||||||||| ||||| || |||| ||||| || |||| Sbjct 1049520 CAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTC 1049461 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | |||||| || || || || | | ||||||||| | || | | |||||| || Sbjct 1049460 CTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATC 1049401 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || ||||| | | | |||||| || || || | || || || Sbjct 1049400 CTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCGT 1049341 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||||||||| |||||||| Sbjct 1049340 CTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | || ||||||| || |||||| ||||||||||| ||| | Sbjct 1049990 CCGCCTCGAAGACGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAATCGACT 1049931 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||||||| | || || |||||||| |||||||| || | | ||| || || | || Sbjct 1049930 AGAGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGTTGATCAGGGGGG 1049871 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | | |||||||||| ||||| Sbjct 1049870 ATCCCCTCCTTGTCCTGAATCTT 1049848 >seq937 Length=9237706 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| ||| |||||| ||||| || || || | ||| || | | || ||| Sbjct 196079 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCG 196020 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| || | |||||||| || | || | || ||||| || | Sbjct 196019 AGCTGCTTACCGGCGAAGATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGG 195960 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| ||||| || |||| || ||||| || Sbjct 195959 ATCTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTA 195900 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || ||||| || ||||| ||||| || Sbjct 195899 CCCGTTAGGGTTTTCACGAAGATCTGCATCTT 195868 >seq959 Length=5381930 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| | ||| || | |||| ||||||||||| |||||||| Sbjct 731798 TCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAG 731739 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | || |||||||||| ||| || ||||| | Sbjct 731738 ATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTG 731679 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 731678 TCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACG 731619 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 731618 AAAATCTGCAT 731608 >seq978 Length=8767375 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || || ||||| | ||||| ||| |||| ||||||||||||||||| || Sbjct 3245884 TCCTTCTGAATGTTATAGTCAGCAAGAGTACGCCCGTCCTCGAGCTGCTTGCCGGCAAAG 3245943 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | |||||||||| || || ||||| | Sbjct 3245944 ATCAATCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTG 3246003 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || || |||| || || |||| || ||||| || || |||| || || Sbjct 3246004 TCGATGGTATCAGAGCTC---TCAACCTCCAGAGTAATGGTCTTCCCTGTCAAGGTCTTC 3246060 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3246061 ACGAAGATCTGCAT 3246074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || | ||||||||| |||| || |||||||||||||| || Sbjct 3246111 CTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAA 3246170 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||| | ||||||||| | || | | |||||| || Sbjct 3246171 TATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATC 3246209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231482895080