Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq964 96.9 2e-15 seq977 93.3 3e-14 >seq964 Length=1826015 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||| || | ||| || || || || || |||| Sbjct 764498 CATC-CCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAAT 764556 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||||| ||| | || |||| || || || ||||||| || | |||||| |||| Sbjct 764557 CGGCCAAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCG 764616 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||| || || || || || |||| ||| | | | |||||| | ||| Sbjct 764617 GAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTAA-CGTTGTCGATTGTGTCAGAGCTC 764675 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || ||||| || || || | ||| || |||||||| |||||| Sbjct 764676 TCCACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATG 764729 >seq977 Length=5547227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || || ||||| || ||||||| | |||||||||||| | || | |||||||| Sbjct 917687 CATCTTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTT 917628 Query 39623 TGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAG 39679 |||| | | | || | || | || ||| || ||||| | ||| || || ||||||| Sbjct 917627 TGTC-CTGAATCTTGGCCTTGACATTGTCAATA--GTGTCGGAGCTCTCAACCTCCAAAG 917571 Query 39680 TAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| || || || || ||||| || || |||||||||||| Sbjct 917570 TAATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCATG 917530 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| ||||| | | || ||||| || ||||| |||| Sbjct 1049726 TCCTTCTGAATATTGTAATCCGCCAAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAG 1049667 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||||||| || | |||||| || || | | | |||| | ||| Sbjct 1049666 ATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTTATC-CTGAATCTTTGCCTTCACGTT 1049608 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | ||| ||| || | ||| || || ||||| ||||| || ||||| |||| ||||| || Sbjct 1049607 GTCTATTGTATCCGAGCTCTCGACCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGAC 1049548 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 1049547 AAAAATTTGCAT 1049536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365455337907