Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq978 125 7e-24 seq964 114 1e-20 seq959 111 2e-19 seq977 96.9 3e-15 >seq978 Length=8767375 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || ||||| || || || |||||| | || || ||| | || Sbjct 3246530 ATGCAAATATTTGTTAAGACCCTCACCGGAAAGACTATCACCCTTGAAGTTGAGAGCTCC 3246471 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || || | || || || ||||||||| | ||||| Sbjct 3246470 GACACCATTGACAATGTCAAAGCCAAGATACAGGATAAGGAAGGAATTCCCCCAGACCAG 3246411 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || |||| ||||| || |||||||||| Sbjct 3246410 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGTCGCACTCTAGCCGACTACAAC 3246351 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || || ||||| || ||| ||||||| || Sbjct 3246350 ATCCAGAAGGAATCCACCCTCCACTTGGTCCTCCGTCTGAGAGGTGG 3246304 >seq964 Length=1826015 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || |||||| | || || ||| | | Sbjct 764728 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTGGAGAGCTCT 764669 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | || |||| || || ||||| ||||| | ||||| Sbjct 764668 GACACAATCGACAACG-TTAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCA 764610 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || ||||| |||||||| || | ||||| | ||| ||||| Sbjct 764609 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTGGAGGARGGTCGCACTTTGGCCGATTACAA 764550 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||||||| ||| Sbjct 764549 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGT 764513 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||||||| | || || ||| | || Sbjct 764956 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACCATCACCCTGGAGGTTGAGAGCTCC 764897 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | || || || || |||||| | ||||| Sbjct 764896 GACACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCAG 764837 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| || || |||||||| || | || || ||| || |||||| Sbjct 764836 CAGAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTCGCTGATTACAAC 764777 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| ||||| | || || || |||||||| Sbjct 764776 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCT 764745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||| || | || || ||| | | Sbjct 764273 AATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACCATTACTCTTGAGGTGGAGAGCTC 764214 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | || | |||||| | ||||| |||||||| || | || || Sbjct 764213 TGATACTATTGATAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCACCGGATCA 764154 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| ||||| || || | ||||| || |||||||| Sbjct 764153 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTGCTGACTACAA 764094 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || ||||| ||||||||| | || ||||| || Sbjct 764093 TATCCAAAAGGAGTCTACACTGCACTTGGTGCTGAGGTTAAGAGGAGG 764046 >seq959 Length=5381930 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| || || |||||| | || |||||| | | Sbjct 731608 ATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTTCT 731667 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| ||||| ||||| | ||||| Sbjct 731668 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAG 731727 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || || ||||| || |||| | ||||| ||||||||| Sbjct 731728 CAACGTCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCAGAACCCTAGCAGACTACAAC 731787 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | || || || | || || ||| Sbjct 731788 ATACAGAAGGAATCCACACTTCACCTTGTTCTACGT 731823 >seq977 Length=5547227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || || ||||||||||| |||| |||||| || Sbjct 1026757 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAAACCATCACTCTCGAGGTCGAGAGTTCC 1026698 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| ||||| || || |||| || Sbjct 1026697 GATACCATCGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAG 1026638 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| |||||||| || || |||| || ||||| ||| || ||| Sbjct 1026637 CAGCGCCTAATCTTCGCCGGCAAACAACTCGAGGACGGTCGGACCCTAGCCGATTATAAC 1026578 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| | || || ||| | || || ||| Sbjct 1026577 ATTCAGAAGGAGTCCACCCTCCATCTCGTTCTCCGT 1026542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| ||||| | || || || || || || | || || ||| | | Sbjct 1025845 ATGCAGATATTCGTTAAAACATTGACCGGGAAGACGATTACGCTGGAGGTTGAGAGCTCA 1025786 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| || | ||||| ||||||||||| | || || Sbjct 1025785 GATACCATAGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCA 1025727 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || || || || || | || || || || || || Sbjct 1025726 GCAGAGGCTTATCTTCGCTGGGAAGCAACTTGAAGATGGCCGTACTCTGGCTGATTATAA 1025667 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| |||| || || | || || ||| | |||||||| Sbjct 1025666 CATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTTAGAGGCGG 1025619 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||| || || ||||| || || || | || || |||| | Sbjct 1049308 ATGCAAATATTTGTTAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGGGTTCT 1049367 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | ||||| | || || ||||| ||||| | ||||| Sbjct 1049368 GACACGATTGACAATG-TCAAGGCCAAAATTCAGGATAAGGAGGGGATTCCTCCGGACCA 1049426 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | || || || ||| |||| |||| || || || ||| || || Sbjct 1049427 GCAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGAACTCTTGCCGATTATAA 1049486 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 || |||||||| |||| || ||| |||| Sbjct 1049487 TATTCAAAAGGAGTCGACTCTTCATCTGGT 1049516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166679135360