Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq595 161 1e-34 seq957 120 4e-22 >seq595 Length=996587 Score = 161 bits (178), Expect = 1e-34 Identities = 244/338 (72%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||||||||| | ||||| ||||| || | |||| ||| || |||||| | |||| Sbjct 860796 TCAAGGATATCTGCACGATTGGTTGCTGCAACTACAATAATGCCAGTGTTTCCT--TCAA 860853 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| |||||||| |||||||| | ||||||||||| |||||| || || | Sbjct 860854 AACCATCCATTTCTGTCAACAGCTGGTTGAGAGTTTGTTCCCTTTCATCGTTTCCT--CC 860911 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 860912 TCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 860971 Query 16094 TGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || | | | | | | ||| ||| ||||| || ||||| || || ||||||| Sbjct 860972 AGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACACGAGAAGCACCAACACCAA 861030 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | || | ||||| |||| || || || || | |||||| Sbjct 861031 CAAACATCTCAACAAACTCTGAGCCGGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACCA 861089 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || ||| | | ||||| ||||||||||| Sbjct 861090 GCAATTGCCTTGGCTAACAATGTCTTTCCCGTACCTGG 861127 >seq957 Length=6255442 Score = 120 bits (132), Expect = 4e-22 Identities = 200/285 (70%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| || ||||||||||| |||||||||||||| | |||||||| | Sbjct 5581965 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATTTCC---- 5581910 Query 16035 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| || ||| ||| | |||| ||||||| ||||||||||||||||| || || Sbjct 5581909 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCAATAAATACA 5581852 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 16144 || || || | || || | || ||||| | ||||| ||| || | || || Sbjct 5581851 ATRCAAGG--GGCCTTAGCCTTTGCCTTCTCAAACAAATCCC--TCACTCTAGAAGCTCC 5581796 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 |||||| ||||||| ||||||||| | || || | ||| | ||| || ||| | Sbjct 5581795 CACACCCACAAACAACTCCACAAATTCTGAAGCTGCACAGGAAAAGAATGGCACACCGGC 5581736 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| |||| |||| || | ||| || || ||||| || || Sbjct 5581735 CTCACCGGCAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGG 5581691 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 16033 ||||||||||||||||||| |||||||| | ||||| || | ||||||||| || Sbjct 155385 AAACCATCCATCTCTGTCAGCAGCTGGTTTAGTGTTTGCTCTCTTTCATCATTTCCTCCA 155326 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | || ||||| || | ||| | || || ||||||||||| ||||||||||| | ||| Sbjct 155325 CCTA-TACCAGTACCTCTCTGCCTCCCAACAGCATCAATCTCGTCAATGAAGACCAAGCA 155267 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 ||| ||| || ||| | || | ||||| || | | || || || ||||| Sbjct 155266 TGGCGAATTGTCTTTAGCCTTGTTGAATAAATCCCTCACTCTCGAAGCCCCAACTCCAAC 155207 Query 16154 AAACATCTC 16162 ||||||||| Sbjct 155206 AAACATCTC 155198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734803664880