Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq595 149 7e-31 seq957 118 1e-21 seq940 89.7 6e-13 seq558 86.0 7e-12 >seq595 Length=996587 Score = 149 bits (164), Expect = 7e-31 Identities = 239/337 (71%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||||||||| | ||||| || || || | |||| ||| || |||||| | |||| Sbjct 860796 TCAAGGATATCTGCACGATTGGTTGCTGCAACTACAATAATGCCAGTGTTTCCT--TCAA 860853 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| |||||||| || ||||| | ||||||||||| |||||| || || | Sbjct 860854 AACCATCCATTTCTGTCAACAGCTGGTTGAGAGTTTGTTCCCTTTCATCGTTTCCT--CC 860911 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | |||| ||| || |||||||| ||||||| || ||||| || Sbjct 860912 TCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 860971 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || || ||| | | || ||||| || || | || || |||||||| Sbjct 860972 AGGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACACGAGAAGCACCAACACCAAC 861031 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | || | ||||| |||| || || || || | |||||| | Sbjct 861032 AAACATCTCAACAAACTCTGAGCCGGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACCAG 861090 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || ||| | | ||||| ||||||||||| Sbjct 861091 CAATTGCCTTGGCTAACAATGTCTTTCCCGTACCTGG 861127 >seq957 Length=6255442 Score = 118 bits (130), Expect = 1e-21 Identities = 195/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || |||||||| || |||||||||||||| | |||||||| | Sbjct 5581965 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATTTCC---- 5581910 Query 9342 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| || ||| ||| | |||| ||||||| ||||||||||||||||| || ||| Sbjct 5581909 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCAATAAATACA 5581852 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || || | || | ||||| | ||| | || || || |||||| Sbjct 5581851 ATRCAAGGGGCCTTAGCCTTTGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACA 5581792 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||||| ||||||||| | || || | ||| | ||| || ||| | ||| Sbjct 5581791 CCCACAAACAACTCCACAAATTCTGAAGCTGCACAGGAAAAGAATGGCACACCGGCCTCA 5581732 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||| |||| || | ||| || || ||||| || || Sbjct 5581731 CCGGCAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGG 5581691 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9340 ||||||||||||||||||| || ||||| | ||||| || | ||||||||| || Sbjct 155385 AAACCATCCATCTCTGTCAGCAGCTGGTTTAGTGTTTGCTCTCTTTCATCATTTCCTCCA 155326 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | || ||||| || | ||| | || || ||||||||||| ||||||||||| | || Sbjct 155325 CCTA-TACCAGTACCTCTCTGCCTCCCAACAGCATCAATCTCGTCAATGAAGACCAAGCA 155267 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| || || | | || | ||| | || || || || || ||||| Sbjct 155266 TGGCGAATTGTCTTTAGCCTTGTTGAATAAATCCCTCACTCTCGAAGCCCCAACTCCAAC 155207 Query 9461 AAACATCTC 9469 ||||||||| Sbjct 155206 AAACATCTC 155198 >seq940 Length=8971605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||||||||||||||| || || | || || |||||| | || ||||| || || Sbjct 8502656 TGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTCAAACCGGGCATTAGCCCG 8502597 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || ||||| |||||| | || ||||| || ||| |||||||| || ||||| || || Sbjct 8502596 CGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCCTCGACGCAA 8502537 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || | | ||||| || || || Sbjct 8502536 GCAAAGGCGACCAAACGCTCCGCAAATGA 8502508 >seq558 Length=4929555 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTA 106514 ||| || || |||||||||||||| || ||||| || || | | || |||||||| | Sbjct 350820 TGGCAGAGCAATTGATGCCAAATTACACACAGCAGTTTC-TGTTGGGCTAGTGTACTCAA 350762 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 ||||| ||||| ||||| ||| ||| || ||||| | |||| ||||| |||||| Sbjct 350761 TGATTTCAGTACATAAGTTAGAAGACTTGATAGTCCCAAGGTTCTGCTGGTTGCTCTTTC 350702 Query 106575 TGTTGCACGCATCCTTGTAGAGCATG 106600 |||||| | |||||| |||| ||| Sbjct 350701 GGTTGCAAGAATCCTT-AAGAGTATG 350677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973580109960