Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq964 129 4e-25 seq978 125 5e-24 seq977 96.9 2e-15 seq959 89.7 3e-13 seq937 84.2 1e-11 >seq964 Length=1826015 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| || | |||||||||| ||| ||| ||||||||||||||||| | Sbjct 764272 TTCCTCCCCTCAATCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAG 764331 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || | || || ||||| || |||||||| || | | ||||||||| | | Sbjct 764332 CAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 764391 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || ||| || | || | ||| ||| | Sbjct 764392 GGATACCTTCCTTGTCTTGAATTTTAGCTTTCACATTGTCAATGGTATCAGAACTCTCGA 764451 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 764452 CCTCCAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 764500 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | ||||||||| | || ||| || |||||||| || || | | Sbjct 764958 CCTCCCCTCAAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCA 765017 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | || || ||||| ||||||||||| || || | |||||||||| | || Sbjct 765018 AGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 765077 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| ||||| || ||||| || || |||| | || | ||| || Sbjct 765078 ATCCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCGGAGCTCTCGACC 765137 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || ||||| || || ||||| |||||||||||||| Sbjct 765138 TCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 765184 >seq978 Length=8767375 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||| | |||||||||| || ||| ||||||||||||||||| | Sbjct 3245846 TTCCTCCCCTCAGCCTGAGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTATAGTCAG 3245905 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | || | || || ||||| || |||||||| || | || ||||||||| | | Sbjct 3245906 CAAGAGTACGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTG 3245965 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | |||||||||||| ||| || ||||| || | ||||| ||| | | Sbjct 3245966 GGATCCCCTCCTTGTCCTGAATTTTTGCCTTGAC--AT--TGTCGATGGTATCAGAGCTC 3246021 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | || ||||| || || || | |||||||| ||||||||||| Sbjct 3246022 TCAACCTCCAGAGTAATGGTCTTCCCTGTCAAGGTCTTCACGAAGATCTGCAT 3246074 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||| | ||||||||||| || || ||||||||||| || || | | Sbjct 3246076 CCTCCCCTCAGCCTGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 3246135 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || ||||| || ||||||||||| | | ||||||||| | || Sbjct 3246136 AGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGG 3246195 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||| || ||| ||| | || | ||| ||| || Sbjct 3246196 ATACCCTCCTTATCTTGAATTTTGGCTTTCACGTTGTCAATGGTATCAGAACTCTCGACT 3246255 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| ||||| |||||||||||||| || ||||||||| Sbjct 3246256 TCCAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 3246303 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| | || | || | || || Sbjct 3246322 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTGCGACCGTCCTCG 3246381 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||||||||| || || | ||||||||| | || | || ||||| || Sbjct 3246382 AGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGT 3246441 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | |||||| || | ||| || || ||| Sbjct 3246442 ATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCAAGGGTGATAGTCTTT 3246501 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| ||||| || |||||| Sbjct 3246502 CCGGTGAGGGTCTTAACAAATATTTGCATA 3246531 >seq977 Length=5547227 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| |||| ||| ||||| ||||||||||| |||| Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| | || |||| ||| || || ||||| || | || ||| ||||| | || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGGATGCTATCGAT----TCACCGGCCT 34929 | ||| ||||| || |||||| ||| ||||| || |||| || ||| | Sbjct 1025967 ATCCCTTCCTTATCCTGAATCTT-TGTCTTGAC--AT--TATCAATAGTATCAGAACTTT 1026021 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | || |||||||| || ||||| || || ||||||||||||||| Sbjct 1026022 CAACCTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCATA 1026074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||| || | ||| | || | || || || ||||| ||||| || Sbjct 1026567 TCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAG 1026626 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| || ||||| || | || | ||||||||||| ||||| ||||| || Sbjct 1026627 ATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGAC--AT 1026684 Query 34911 GCTATCGAT-TCACCGG---CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| | ||| ||| || |||| || |||||||| || || || || || Sbjct 1026685 --TATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTT 1026742 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 1026743 CACAAAGATCTGCAT 1026757 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||||| ||| || ||||| || || || || | |||| | || |||| Sbjct 917287 CAAAACAAGGTGAAGTGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTACGACCATC 917228 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| ||||| || ||| |||| | || |||||| ||| | || | |||||||||||| Sbjct 917227 CTCCAGTTGTTTCCCCGCAGATATCAATCTTTGCTGATCTGGAGGAATCCCCTCCTTGTC 917168 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || |||||| | || | || | ||||| || | || ||||| Sbjct 917167 CTGAATTTTTGCTTTGACATTGTCAATTGTATCTGAGCTTTCAACTTCAAGAGTGATGGT 917108 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| || |||| ||||| Sbjct 917107 CTTGCCTGTAAGGGTCTTAACGAAGACTTGCAT 917075 >seq959 Length=5381930 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| |||| ||| ||||| ||||| ||||| | ||| ||| | || || Sbjct 731817 AACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTC 731758 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || ||||||||||| | || | ||||||||||| Sbjct 731757 GAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTG 731698 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 || || ||||| || | ||||| ||| | ||| || || | ||| || | Sbjct 731697 GATTTTGGCCTTGAC--AT--TGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAG 731642 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || |||||||| || || || || ||||||||| Sbjct 731641 TCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATA 731607 >seq937 Length=9237706 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| |||| ||| ||| |||| || ||||| || ||||| || Sbjct 196061 TCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCGAGCTGCTTACCGGCGAAG 196002 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || ||||| || ||||| ||||| Sbjct 196001 ATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTAGCCTTGACATTG 195942 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || || | ||||||||| || ||||| || || ||||| Sbjct 195941 TCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTACCCGTTAGGGTTTTCACG 195882 Query 34971 AAGATCTGCATATTCG 34986 ||||||||||| |||| Sbjct 195881 AAGATCTGCATCTTCG 195866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629726613912