Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq977 125 5e-24 seq964 104 2e-17 seq978 91.5 1e-13 >seq977 Length=5547227 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| |||| ||||| ||| |||||| |||||||||||| || ||||| | Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| ||||||||||| || ||||| |||| || ||||| |||| || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | | || || || || ||| Sbjct 1025967 ATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACC 1026026 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 1026027 TCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| |||| ||| || || ||| ||||||||||| ||||| | ||| |||| Sbjct 1049525 AGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGG 1049466 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || |||| ||| || |||| |||| |||||| Sbjct 1049465 CCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCC 1049406 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || ||| | | | || || |||| ||||| | ||| Sbjct 1049405 TTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTA 1049346 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | |||||| ||||| || ||||| Sbjct 1049345 ATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | |||||| || ||| || |||||||||||||| | | ||| Sbjct 1049753 AGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCCAAGGTTCTG 1049694 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| ||||||| |||| ||| ||| Sbjct 1049693 CCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCC 1049634 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || || | | | || || ||| ||||||| ||| Sbjct 1049633 TTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATCCGAGCTCTCGACCTCCAAGGTA 1049574 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | ||||| |||||||| ||||| Sbjct 1049573 ATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | || | ||| || ||| ||| || || ||||||||||| | Sbjct 1049990 CCGCCTCGAAGACGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAATCGACT 1049931 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||| ||||| || || || | ||||||||| | ||| Sbjct 1049930 AGAGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGTTGATCAGGGGGG 1049871 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||| ||| | | | || || ||||||| Sbjct 1049870 ATCCCCTCCTTGTCCTGAATCTTGGCTTTCACATTGTCTATGGTATCAGAGCTCTCCACC 1049811 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || ||||| || || |||||||||||||| Sbjct 1049810 TCCAGTGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1049764 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | ||| || || ||| || || || |||||||| | | ||| Sbjct 1026084 AGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTTCTG 1026143 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| |||||||| ||||| ||||| ||||| | |||| || ||| Sbjct 1026144 CCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGAATCCCTTCC 1026203 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || || | | | || || ||| ||||||| |||| Sbjct 1026204 TTATCTTGAATCTTTGCCTTCACGTTGTCTATCGTATCAGAGCTCTCGACCTCCAACGTA 1026263 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || | ||||| |||||||| |||||| Sbjct 1026264 ATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATC 1026302 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | ||| || || ||| ||||||||||| ||||| | ||| | || Sbjct 1026312 AGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTACGG 1026371 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || || |||| ||| || |||| |||| ||||||| Sbjct 1026372 CCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCC 1026431 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || || | | | || || ||| ||||| | ||| Sbjct 1026432 TTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACCTCAAGAGTA 1026491 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | |||||| ||||| |||||||| Sbjct 1026492 ATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || || ||||||| ||| | || | || || | ||||| || || || Sbjct 1025655 TCCTTCTGGATGTTATAATCAGCCAGAGTACGGCCATCTTCAAGTTGCTTCCCAGCGAAG 1025714 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||||| |||| ||||||||||| ||||||| || || Sbjct 1025715 ATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 1025774 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||| ||||||| ||||||||| || || ||||| ||||| || Sbjct 1025775 TCTATGGTATCTGAGCTCTCAACCTCCAGCGTAATCGTCTTCCCGGTCAATGTTTTAACG 1025834 Query 48756 AAAATCTGCATC 48767 || ||||||||| Sbjct 1025835 AATATCTGCATC 1025846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||||| ||| |||||||||||| ||||| |||| || ||||| Sbjct 917064 AGTCGCAAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCAGCAAGGGTTCGA 917005 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| || || || ||||| |||| || || ||||| | || | || ||| Sbjct 917004 CCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGTGGGATACCTTCC 916945 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || || | | | | || || ||| ||||| | ||| Sbjct 916944 TTGTCTTGAATCTTTGCCTTGGCATTATCGATGGTGTCAGAACTCTCAACCTCAAGCGTG 916885 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||| |||| Sbjct 916884 ATGGTCTTGCCTGTGATGGTCTTAACAAAAATTYGCAT 916847 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| || ||||| | ||| | ||| |||| || | || Sbjct 1026554 ATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTG 1026613 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || ||||| || || || ||||| ||||| | || | |||||||||||| ||||| Sbjct 1026614 TTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 1026673 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | | || || ||| ||||| | || || ||||| || || Sbjct 1026674 AGCCTTGACATTATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTTACCGGT 1026733 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||||| ||||| ||||||||| Sbjct 1026734 TAGGGTTTTCACAAAGATCTGCATC 1026758 >seq964 Length=1826015 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || || |||||| || || || ||| ||||| |||||||| |||| Sbjct 764046 CCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 764105 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||| || || || |||| | ||| ||||||| || Sbjct 764106 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 764165 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||| ||| || ||| | | | || || || ||||||| Sbjct 764166 ATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTCTCCACC 764225 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || || ||||| || || || || |||||||| Sbjct 764226 TCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 764272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| |||| ||| | || | || ||||| ||| Sbjct 763842 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCATCTTCCAATTGC 763901 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| ||||| |||| || || || || | ||||| ||||||||||| || || Sbjct 763902 TTACCAGCAAAGATCAATCTTTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATTTTA 763961 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||||||||||| || || || ||||| ||| Sbjct 763962 GCCTTCACATTATCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTCTTTCCTGTC 764021 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || |||||||||||||| Sbjct 764022 AGGGTCTTCACAAAAATCTGCAT 764044 >seq978 Length=8767375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||||| || || || || || ||||| || || |||| Sbjct 3245848 CCTCCCCTCAGCCTGAGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTATAGTCAGCA 3245907 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGG 48658 ||| | || |||| || | |||||| |||||||| |||| || ||| || || | |||| Sbjct 3245908 AGAGTACGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGG 3245967 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||||||||| ||| ||| || ||| | | | || || ||| || Sbjct 3245968 ATC-CCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATGGTATCAGAGCTCTCAAC 3246026 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| ||||| || || || ||||| || || || || ||||||||| Sbjct 3246027 CTCCAGAGTAATGGTCTTCCCTGTCAAGGTCTTCACGAAGATCTGCATC 3246075 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||||| || || || ||| || ||||| |||||||||| Sbjct 3246076 CCTCCCCTCAGCCTGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 3246135 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| || | |||||| ||||||||||||| | ||| || || | || Sbjct 3246136 AGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGG 3246195 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||| || ||| || | | | || || ||| || Sbjct 3246196 ATACCCTCCTTATCTTGAATTTTGGCTTTCACGTTGTCAATGGTATCAGAACTCTCGACT 3246255 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || ||||| || | ||| || || ||||||||||| Sbjct 3246256 TCCAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 3246302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933054819217