Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq595 109 7e-19 seq957 107 2e-18 seq940 89.7 6e-13 seq558 84.2 3e-11 >seq595 Length=996587 Score = 109 bits (120), Expect = 7e-19 Identities = 228/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||||||||||||||| | | ||| || || || |||||| || || || || Sbjct 861127 CCAGGTACGGGAAAGACATTGTTAGCCAAGGCAATTGCTGGTGAAGCAGGGGTTCCTTTT 861068 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | || | | || | ||||| ||||||||||||||||| ||||| | || Sbjct 861067 TTCTCAATT-TCCGGCTCAGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGTGT 861009 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||||| || | | ||| || || || || ||||| || ||||||| || Sbjct 861008 CCGTGATCTTTTCAAGAAGGCCAAGGAGAACGCTCCTTGCATTGTATTTGTTGATGAAAT 860949 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || |||| | | |||| | | | | || ||| || || || ||| Sbjct 860948 TGATGCTGTTGGACGGCAAAGAGGAACTGGAATTGGAGG--AGGAAACGATGAAAGGGAA 860891 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 ||||| | || || || | || || |||||||| ||||| | ||||||||| | Sbjct 860890 CAAACTCTCAACCAGCTGTTGACAGAAATGGATGGTTTTGAAGGAAACACTGGCATTATT 860831 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || |||| || || ||||| | ||||||||||| Sbjct 860830 GTAGTTGCAGCAACCAATCGTGCAGATATCCTTGA 860796 >seq957 Length=6255442 Score = 107 bits (118), Expect = 2e-18 Identities = 195/283 (69%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| || ||||| | || |||| | || ||||| | ||| |||||| Sbjct 5581691 CCTGGCACGGGGAAAACCCTTTTAGCTAGAGCAGTTGCCGGTGAGGCCGGTGTGCCATTC 5581750 Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 | || |||| || || | ||||||||| ||||||| |||||||| || || | Sbjct 5581751 TTTTCCTGTGCA--GCTTCAGAATTTGTGGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAG 5581808 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | | ||| | ||||| | || | || || || ||||| || |||||||||| Sbjct 5581809 TGAGGGATTTGTTTGAGAAGGCAAAGGCTAAGGCCCCTTGYATTGTATTTATTGATGAGA 5581868 Query 175493 TTGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGA 175546 ||||||| ||||| | |||| | ||| ||| || ||| | |||||| |||| Sbjct 5581869 TTGATGCAGTGGGAAGGCAAAGAGGAGCAGGGCTTGGAGGT------GGAAATGATGAGA 5581922 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 |||||||||| |||||||| || | || || |||||||| || Sbjct 5581923 GAGAACAAACTATTAATCAGCTTTTGACTGAAATGGATGGTTT 5581965 >seq940 Length=8971605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || ||||| | | || ||||| || || ||||| || |||||||| ||| Sbjct 8502508 TCATTTGCGGAGCGTTTGGTCGCCTTTGCTTGCGTCGAGGGGATATTCTTCTCGGGGAGT 8502567 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||||| || | |||||| ||||| || || || ||||| || | |||||| || Sbjct 8502568 TTTTGCGCGATATTTTGGTTAAAGAAACGCGGGCTAATGCCCGGTTTGACCTTCTCGAAC 8502627 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || | || || ||||||||||||||||| Sbjct 8502628 GAGTTAATCTCGCGAGATGAGGGTCTCCA 8502656 >seq558 Length=4929555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | || ||||||||| ||||||| ||||||| | || || | || | Sbjct 349293 CGAGACTTTGACTATGATTACTTTGGCTTCAAAACACTTGAGAGGTCTTACCTCTTAAAG 349352 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| |||||| ||||||| ||| |||| | | || || Sbjct 349353 G-TCCAAGGAAAAGTTGTAGAAAGGCCACAGCACATGTTGATGAGGGTATCTGTTGGAAT 349411 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGT 75305 |||| ||| || ||||| |||| || ||| |||| | |||||| ||| | || Sbjct 349412 CCACAAGGATGATATTGAATCTG-CTATCAGAACATATCATTTGATGTCTCAACGATGGT 349470 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | | || ||| | || ||||| ||||||||||| || || || || || Sbjct 349471 TTACCCATGCATCCCCTACCCTTTTCAATGCTGGAACTCCCAGGCCCCA 349519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562299479520