Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq978 127 4e-24 seq977 116 7e-21 >seq978 Length=8767375 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||| || | || | || || || || |||||| Sbjct 3246301 ATACCACCTCTCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 3246360 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | || || | ||| ||||||||||| || | ||||| || || || Sbjct 3246361 GCTAGAGTGCGACCGTCCTCGAGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 3246420 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| ||||| ||||| |||| ||| | ||| ||| || ||||| |||| Sbjct 3246421 GGAATTCCTTCCTTATCCTGTATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCA 3246480 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || |||||||||||||| Sbjct 3246481 ACTTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 3246530 >seq977 Length=5547227 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||||||||| |||| | |||| || || Sbjct 1049516 ACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTCCTCC 1049457 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || ||||| || | |||||| || || ||||| || || || ||||| || Sbjct 1049456 AACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATCCTGA 1049397 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||||| || | ||| ||| || || ||| |||||| || ||||| || || || Sbjct 1049396 ATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCGTCTTG 1049337 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| |||||||||||||| Sbjct 1049336 CCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | | ||| | || ||||| | || | ||| || ||| || ||||| Sbjct 916848 ATTCCACCCCGAAGTCGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 916789 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| || ||| || | |||||| |||||||| || ||||| || |||||||| Sbjct 916788 GCAAGAGTTCGAGCATCCTCCAGTTGTTTCCCGGCAAAGATCAATCTTTGCTGATCAGGT 916729 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || | ||||| || ||||| || || | || | || ||| || || ||| || | Sbjct 916728 GGGAYACCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATGGTGTCAGAACTCTYA 916669 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||| || || | |||||||||||||| Sbjct 916668 ACCTCAAGCGTGATGGTCTTGCCTG--AGGGTCTWAACAAATATTTGCAT 916621 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||| || |||||||| | | ||| ||||||||||| || |||||||| Sbjct 917686 ATCTTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTT 917627 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || |||| || | ||| |||||| ||||| |||||| || | ||| || Sbjct 917626 GTCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAAT 917567 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || ||||| || ||||| Sbjct 917566 GGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 917531 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || ||||| || ||||||||||||| | || | | | Sbjct 917972 CGAAGCACAAGGTGGAGGGTTGCCTCCTTCTGGATATTATAGTCGGCTGGAGTCCGACCA 917913 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | ||||||||||| |||| |||||||| || Sbjct 917912 TCCTCGAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGATCTGGAGCAATTCCTTCCTTG 917853 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||||||||| || || || || | ||| || Sbjct 917852 TCCTGAATCTTTGCTTTCACATTATCAATAGTATCTGAGCTTTCCACCTCCAAAGTGATC 917793 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 || || |||| || || || ||||| ||||||| Sbjct 917792 GTCTTCCCTGGAAGTGTCTTCACAAAAATTTGCA 917759 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || |||||||| || | | ||| ||||||||||| || ||||| ||| Sbjct 1026147 TCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTA 1026206 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || || ||||| || ||| || || | || || Sbjct 1026207 TCTTGAATCTTTGCCTTCACGTTGTCTATCGTATCAGAGCTCTCGACCTCCAACGTAATC 1026266 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| ||||| ||||| |||||||| Sbjct 1026267 GTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899643390479280