Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq977 118 2e-21 seq964 95.1 2e-14 seq940 86.0 9e-12 >seq977 Length=5547227 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| || ||| | || || ||| |||| Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || || ||||| ||||| || ||||| || ||| Sbjct 1026013 GATACTATTGATAATGTCAAGACAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAA 1025954 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || |||||| | ||||| | |||| | | |||||||| Sbjct 1025953 CAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATAAC 1025894 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | ||||||||| | ||| Sbjct 1025893 ATTCAAAAAGAGTCCACGCTTCATCTGGTG 1025864 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| ||||||| | || || || || ||||| | || || || | |||| Sbjct 1049308 ATGCAAATATTTGTTAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGGGTTCT 1049367 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| || ||||| || || || ||||| || || Sbjct 1049368 GACACGATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGGATTCCTCCGGACCAG 1049427 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||| | || || | ||||| | | ||||||||| Sbjct 1049428 CAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGAACTCTTGCCGATTATAAT 1049487 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| ||| |||| |||||| | || || || Sbjct 1049488 AT-TCAAAAGGAGTCGACTCTTCATCTGGTCTTGAG 1049522 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || || || ||||| | || || || ||| Sbjct 1026529 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGAGTTCC 1026470 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| |||||||| || ||||| ||||| || || Sbjct 1026469 GACACGATTGACAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCTCCGGACCAG 1026410 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || || |||||| | || || | | ||| | | ||||||||| Sbjct 1026409 CAGAGACTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGTACTCTTGCCGATTATAAT 1026350 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| ||| |||| |||||| | || || || Sbjct 1026349 AT-TCAAAAGGAGTCGACTCTTCATCTTGTCTTGAG 1026315 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || ||||| || || || || || Sbjct 917531 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 917590 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || || || || ||||||||||| ||||| || || Sbjct 917591 GACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAG 917650 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||||| ||| || || ||| | |||||| ||| || | |||||||||| Sbjct 917651 CAGCGTCTGATTTTTGCTGGCAAACAGTTTGAAGATGGCAGGACACTTGCAGATTATAAC 917710 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAG 156043 || ||| || | || || ||| ||||| |||| || Sbjct 917711 ATCCACAAGGAATCAACTCTACATCAGGTGTTGTGATTGAG 917751 >seq964 Length=1826015 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | |||||||| || || || | || ||||| |||| Sbjct 764500 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTCGAGAGTTCT 764441 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| |||||| ||||| || ||||| || || ||||| || Sbjct 764440 GATACCATTGACAATGTGAAAGCTAAAATTCAAGACAAGGAAGGTATCCCACCAGACCAG 764381 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || ||||| | |||||| ||||||||||| || Sbjct 764380 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGA 764346 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 155810 TTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGA 155869 ||||| ||| | ||||| || ||| |||| || | |||||||| || ||||| | || Sbjct 765197 TTTATTTAAACAGATGCAGATCTTTGTTAAGACCCTTACTGGAAAGACAATTACTCTCGA 765138 Query 155870 AGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929 ||||| || || | || || || || || || |||||||| ||||| || Sbjct 765137 GGTCGAGAGCTCCGACACCATAGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGGAT 765078 Query 155930 ACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 || ||||| || ||||| |||| | |||||| ||||||||||| || ||||||| | Sbjct 765077 TCCCCCAGACCAGCAAAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAACTCT 765018 Query 155990 ATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 | ||||| || || || ||| || |||| || || || || Sbjct 765017 TGCTGATTACAACAT-TCAAAAGGAATCGACCCTCCACTTGGT 764976 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || ||||| || || || ||||| | || || || || Sbjct 764273 AATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACCATTACTCTTGAGGTGGAGAGCTC 764214 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| || ||||| ||||| || || || || || || || || || || Sbjct 764213 TGATACTATTGATAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCACCGGATCA 764154 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | || || ||||||||||| ||| | | ||| | | || || | Sbjct 764153 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTGCTGACTACA- 764095 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| ||| | || || || || ||| | || |||||||| || Sbjct 764094 -ATATCCAAAAGGAGTCTACACTGCACTTGGTGCTGAGGTTAAGAGGAGG 764046 >seq940 Length=8971605 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 ||| ||||| || ||| || | ||| ||||||| || ||||| ||||| || || Sbjct 8502675 TAAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGT 8502616 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 || |||||||||| || | ||| |||| ||||||||||| ||||| | || || Sbjct 8502615 CAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAA 8502556 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 |||||| ||||| ||||| || || || | || | || ||||| Sbjct 8502555 GAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAA 8502511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863043716400