Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq977 122 2e-22 seq937 104 5e-17 seq978 100 6e-16 seq964 96.9 7e-15 seq946 86.0 1e-11 >seq977 Length=5547227 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | ||| | || | |||||| || |||||||| Sbjct 1025844 ATCCCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCC 1025903 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1025904 GCCAGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGA 1025963 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || | || |||||| |||| ||| || ||| Sbjct 1025964 GGGATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCA 1026023 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||||||||| || | ||||| | ||| |||||||| Sbjct 1026024 ACCTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 107 bits (118), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || || || | |||||| || | |||||| || || || ||| Sbjct 917076 ATTCCACCACGAAGTCGCAAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCA 917017 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| |||| |||||| ||||||||||| ||||| || ||||||||| Sbjct 917016 GCAAGGGTTCGACCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGT 916957 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || || || Sbjct 916956 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTGGCATTATCGATGGTGTCAGAACTCTCA 916897 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| || || || | || |||| ||| || ||||| Sbjct 916896 ACCTCAAGCGTGATGGTCTTGCCTGTGATGGTCTTAACAAAAATTYGCATT 916846 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | || | || || | ||| | ||| | ||| ||| || ||||||||||| Sbjct 1049537 ATACCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGA-ATATTATAATC 1049479 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | ||||| | || ||||| || || ||||||||||| | |||||| || || || Sbjct 1049478 GGCAAGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGG 1049419 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || ||||| || ||||| || ||||| || | || || || Sbjct 1049418 AGGAATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTC 1049359 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || || || |||| ||||||| |||||| ||||| Sbjct 1049358 AACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||||||||| | || | || | ||| | || || ||| |||||||||| Sbjct 1025618 ACCGCCTCTAAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTATAATCAGC 1025677 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||| || ||||| ||||| | ||||| ||||| || || Sbjct 1025678 CAGAGTACGGCCATCTTCAAGTTGCTTCCCAGCGAAGATAAGCCTCTGCTGATCCGGAGG 1025737 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || || || || || || || || ||| | |||||| || || Sbjct 1025738 AATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCTATGGTATCTGAGCTCTCAAC 1025797 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || |||||||||| ||||||||||| Sbjct 1025798 CTCCAGCGTAATCGTCTTCCCGGTCAATGTTTTAACGAATATCTGCAT 1025845 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | ||| || || |||||||| Sbjct 1026528 ATACCACCACGGAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCG 1026587 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | |||||| || || ||||||| | ||| ||||| || Sbjct 1026588 GCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 1026647 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || ||| || |||||| || | ||| || || Sbjct 1026648 GGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCG 1026707 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||||||||| |||| ||||| | ||| |||||||| Sbjct 1026708 ACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | || || | ||||| |||| ||| || ||||| ||||| Sbjct 1049765 ATACCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCC 1049706 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || |||| | || ||||| || || ||||||||||| | | ||| ||||| || Sbjct 1049705 GCCAAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGA 1049646 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || || || || ||| | ||| || || Sbjct 1049645 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATCCGAGCTCTCG 1049586 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || |||||||||| ||||| | ||| || ||||| Sbjct 1049585 ACCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || || || | ||| | ||| | ||| ||| || || || || || Sbjct 916848 ATTCCACCCCGAAGTCGCAAGACGAGATGGAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 916790 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||||| |||| |||| |||||| || |||||||| ||||| || |||||||| Sbjct 916789 AGCAAGAGTTCGAGCATCCTCCAGTTGTTTCCCGGCAAAGATCAATCTTTGCTGATCAGG 916730 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| | ||||| || ||||| || || || || ||| || | || || | || Sbjct 916729 TGGGAYACCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATGGTGTCAGA--ACTC 916672 Query 192486 T--ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || || ||||| || || | | || | || |||||| |||||| Sbjct 916671 TYAACCTCAAGCGTGATGGTCTTGCC--TGAGGGTCTWAACAAATATTTGCATT 916620 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||| |||||| | || | ||| | || | ||| || |||||| ||||| Sbjct 1049991 ACCGCCTCGAAGACGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAATCGAC 1049932 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | || || || || ||||| | |||||||||||||| || Sbjct 1049931 TAGAGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGTTGATCAGGGGG 1049872 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || || ||| ||||| ||| | ||| || || || Sbjct 1049871 GATCCCCTCCTTGTCCTGAATCTTGGCTTTCACATTGTCTATGGTATCAGAGCTCTCCAC 1049812 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || ||||| ||||| || | ||| |||||||| Sbjct 1049811 CTCCAGTGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1049764 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | || | || || | ||| | ||| | ||| ||| || ||||||||||| Sbjct 1026300 ATCCCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGA-ATATTATAATC 1026358 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || | || ||||| || || ||||| ||||| | |||||| || || || Sbjct 1026359 GGCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGG 1026418 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || |||||||| |||||| || || || || | || || || Sbjct 1026419 AGGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTC 1026478 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || || || |||| ||||| | ||| |||||||| Sbjct 1026479 AACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| ||||| ||| ||||| || | | || ||| |||| || | ||| || ||| Sbjct 4466440 GTAGACTCTTG---GATGTTATAGTCCGCCAGAGTACGT-CATCCTCGAGTTGCTTTCCA 4466385 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | ||||| ||||| || || || || || || | ||||| ||| ||| Sbjct 4466384 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCCTCCTTGTACTGTATCTTAGCCTTT 4466325 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 |||||| |||| || || || || ||||||||||| || || ||||| || || Sbjct 4466324 ACATTATCAATAGTGTCCGAACTCTCCACCTCTAGAGTAATCGTCTTCCCAGTCAACGTC 4466265 Query 192520 TTAATAAATATCTGCAT 192536 || | || || ||||| Sbjct 4466264 TTCACGAAGATMTGCAT 4466248 >seq937 Length=9237706 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| ||| || ||| |||||||| | || |||| |||| || | || ||||| Sbjct 196067 GTAGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCGAGCTGCTTACCG 196008 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 || ||||| | | ||| ||||||||||| || ||||| |||||||| || ||| || Sbjct 196007 GCGAAGATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTAGCCTTG 195948 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || | || || ||||| || || || || ||||| ||||| |||| ||| Sbjct 195947 ACATTGTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTACCCGTTAGGGTT 195888 Query 192520 TTAATAAATATCTGCATTTT 192539 || | || |||||||| || Sbjct 195887 TTCACGAAGATCTGCATCTT 195868 >seq978 Length=8767375 Score = 100 bits (110), Expect = 6e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||||||| |||||||| ||||| || ||||| || || ||||| ||||| || | Sbjct 3245690 CATCTTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCT 3245749 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || ||||| || |||||| || | ||| || || || || ||||||| Sbjct 3245750 TGTCCTGAATTTTTGCCTTCACATTATCAATGGTATCAGAGCTCTCAACCTCAAGAGTAA 3245809 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| || || || || || || | ||| ||||||||| Sbjct 3245810 TGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 3245847 >seq964 Length=1826015 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| ||| || |||||| || |||| | || || |||| || | || || ||| Sbjct 764076 GTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTGCGGCCATCCTCGAGCTGCTTGCCA 764135 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 || ||||| || ||||| ||||| ||||| ||||| || || || || ||||| || Sbjct 764136 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGAATTTTTGCCTTC 764195 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 |||||| |||| ||| || || || || ||||||||||| || || || || || Sbjct 764196 ACATTATCAATAGTATCAGAGCTCTCCACCTCAAGAGTAATGGTCTTCCCGGTCAAGGTC 764255 Query 192520 TTAATAAATATCTGCATT 192537 || | || ||||||||| Sbjct 764256 TTCACGAAGATCTGCATT 764273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | || | || | ||| || ||| || || |||| Sbjct 763818 CCACCGCGAAGACGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 763877 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || ||| |||| |||||||| |||||||||||||| ||||| || || || || || Sbjct 763878 AGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGGTCGGGGGGA 763937 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || |||||| || |||||| || | || || || || Sbjct 763938 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATTGTGTCGGAACTCTCCACC 763997 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||| ||||| || || || | || || | ||| ||||||||| Sbjct 763998 TCCAAAGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAATCTGCATT 764045 >seq946 Length=5553863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || | || || || || | || | ||||| ||||||||| || | Sbjct 333427 CCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATATTATAGTCGGCC 333486 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| |||||||| ||||||||||| || | |||||| |||||||| || Sbjct 333487 AAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGA 333546 Query 192430 ATTCCTTCTTTATCTTG 192446 || |||||||| || || Sbjct 333547 ATACCTTCTTTKTCCTG 333563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984467651236650