Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq977 122 2e-22 seq978 96.9 6e-15 seq964 86.0 1e-11 >seq977 Length=5547227 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | ||| | || | |||||| ||| |||||||| Sbjct 1025844 ATCCCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCC 1025903 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| ||||| || || |||||||| || ||||| |||||||| || Sbjct 1025904 GCCAGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGA 1025963 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || | || |||||| |||||||| || ||| Sbjct 1025964 GGGATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCA 1026023 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||||||||| || | ||||| | || |||||||| Sbjct 1026024 ACCTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || | || || | ||| | ||| | ||| || |||||||||||| Sbjct 1049537 ATACCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCG 1049478 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| |||| ||||| || || |||||||| || | |||||| ||||| || Sbjct 1049477 GCAAGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGA 1049418 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || ||||| || ||||| || || || || || Sbjct 1049417 GGAATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCA 1049358 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || || || |||| ||||||| ||||| ||||| Sbjct 1049357 ACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || | || || | ||| | ||| | ||| || |||||||||||| Sbjct 1026300 ATCCCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCG 1026359 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| ||||| || || ||||| || || | |||||| ||||| || Sbjct 1026360 GCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGA 1026419 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || || || || || || || || Sbjct 1026420 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCA 1026479 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || || || |||| ||||| | || |||||||| Sbjct 1026480 ACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | || | ||| || ||| |||||||| Sbjct 1026528 ATACCACCACGGAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCG 1026587 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | |||||| || || || |||| | ||| || || || Sbjct 1026588 GCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 1026647 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || ||| || |||||| || ||||| || || Sbjct 1026648 GGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCG 1026707 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||||||||| |||| ||||| | || |||||||| Sbjct 1026708 ACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 >seq978 Length=8767375 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| |||||||| || || || ||||| ||||| ||||| ||||| || || Sbjct 3245692 TCTTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTG 3245751 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || |||||| || ||||| || || || || ||||||||| Sbjct 3245752 TCCTGAATTTTTGCCTTCACATTATCAATGGTATCAGAGCTCTCAACCTCAAGAGTAATG 3245811 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || || | || ||||||||| Sbjct 3245812 GTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 3245847 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | | || || |||| || | || || || ||||| || || || Sbjct 3246120 AATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAATATCAACCT 3246179 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || || || |||||||| ||||| ||| || || || || Sbjct 3246180 CTGCTGGTCTGGTGGGATACCCTCCTTATCTTGAATTTTGGCTTTCACGTTGTCAATGGT 3246239 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 3246240 ATCAGAACTCTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTG 3246299 Query 172067 CAT 172069 ||| Sbjct 3246300 CAT 3246302 >seq964 Length=1826015 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||| || || || ||||| || || ||||| ||||| || || || || ||| Sbjct 764127 TGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGAATT 764186 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| |||||||| || || || || ||||||||||| || || Sbjct 764187 TTTGCCTTCACATTATCAATAGTATCAGAGCTCTCCACCTCAAGAGTAATGGTCTTCCCG 764246 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | ||| ||||||||| Sbjct 764247 GTCAAGGTCTTCACGAAGATCTGCATT 764273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905124923398200