Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq957 140 1e-27 seq941 109 2e-18 seq970 100 8e-16 seq558 100 8e-16 seq937 86.0 2e-11 seq977 84.2 6e-11 >seq957 Length=6255442 Score = 140 bits (154), Expect = 1e-27 Identities = 363/546 (66%), Gaps = 26/546 (5%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | |||| ||| | ||||||||| |||| | |||| Sbjct 5582088 CCAGCGACATCAGGCCTATCCACAGTGACCTGTCGATCAAACCTTCCAGGCCTCAATAAT 5582029 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTT 288933 || | || | | ||| | |||||| |||||||| || |||| || || ||| Sbjct 5582028 GCAGAATCGAGAACATCTGGTCTGTTAGTTGCTGCTAACACAAT----GACTCCTGAGTT 5581973 Query 288934 TGCTTA-AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 | | || |||||||| || |||| ||||||| |||||||| || |||||||| Sbjct 5581972 CCCAGAGAAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATT 5581913 Query 288993 TGAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCA 289050 | ||||| || | | |||||| ||| | || || |||||||| || ||| Sbjct 5581912 TCCACCTCC--AAGCCCT------GCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCA 5581861 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 || || | | || || | || | || | |||| || || || || | || Sbjct 5581860 ATAAATACAATRCAAGGGGCCTTAGCCTTTGCCTTCTCAAACAAATCCCTCACTCTAGAA 5581801 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAAT-GAATGTTAC 289169 ||||| | ||| ||| ||| || |||||||| ||||| | || ||| ||||| || Sbjct 5581800 GCTCCCACACCCACAAACAACTCCACAAATTCTGAAGCTGC-ACAGGAAAAGAATGGCAC 5581742 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 | || || || || ||||| || || | ||| || || || || ||||||||||| | Sbjct 5581741 ACCGGCCTCACCGGCAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGGTGGTCCTAC 5581682 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTT 289286 || ||| ||| ||||| | ||||| || ||||| |||| || |||||| | || Sbjct 5581681 CAAAAGACATCCTTTTGGAATCTTTGCACCTAAAGCAG---TATACTTATCAGGGTTTTT 5581625 Query 289287 TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGC 289346 || || || || | ||| | | ||| ||||||||| |||| ||| || |||||||| Sbjct 5581624 CAAGAAATCAACCACTTCTTGCAATTCTAATTTTGCCTGATCAGCTCCAGCAACATCAGC 5581565 Query 289347 AAAAGT 289352 || || Sbjct 5581564 GAATGT 5581559 Score = 138 bits (152), Expect = 3e-27 Identities = 280/413 (68%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| ||| | | || || |||||||| || |||||||||||| || Sbjct 155385 AAACCATCCATCTCTGTCAGCAGCTGGTTTAGTGTTTGCTCTCTTTCATCATTTCCTCCA 155326 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | || ||| | | | ||| | | |||||||||||||| ||||||||||| | | Sbjct 155325 CCT--AT-ACCAGTACCTCTC---TGCCTCCCAACAGCATCAATCTCGTCAATGAAGACC 155272 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || ||||| | | | || | ||||| || || || | || || |||| Sbjct 155271 AAGCATGGCGAATTGTCTTTAGCCTTGTTGAATAAATCCCTCACTCTCGAAGCCCCAACT 155212 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCG 289179 |||||| |||| || | || || || | || | || ||| | ||| |||||| Sbjct 155211 CCAACAAACATCTCAATGAACTCTGAGCCTGAGAGCGAAAAGAAAGGTACCCCTGCTTCT 155152 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | ||| | |||| | || || || || || |||||||| ||| || ||| Sbjct 155151 CCAGCAATGGCCTTAGCCAACAAGGTTTTCCCAGTGCCTGGTGGTCCAATTAAGAGTACT 155092 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 ||||| || | | ||||||| ||| | ||||||| ||| |||| || || || ||| Sbjct 155091 CCCTTAGGAATTCTTGCCCCTACAGCAGCAAATTTCTCTGGGGTCTTCAAGAACTCGACA 155032 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || || || | |||||| |||||| ||| ||||| ||| |||| || Sbjct 155031 ATCTCGAGAAAATCTTGTTTTGCTTCATCAACTCCAGCTACGTCATCAAATGT 154979 Score = 118 bits (130), Expect = 3e-21 Identities = 232/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || || ||| |||||| | |||||| || ||||| || | | || | Sbjct 1935345 ATTCCTCACTGTCCCATCATATTTCACCATAATATCCTCCATGGCTTTCACCAGTCGTCT 1935404 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| || ||||||||| ||| ||||| || || ||||| || ||||| | | ||||| Sbjct 1935405 CTGGATGTAACCAGTTTCAGAAGTTTTAACTGCAGTATCTATAAGACCTTCCCTTCCACC 1935464 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||||||||| || | |||| || | ||| | | | | ||| |||| || || Sbjct 1935465 CATAGCATGGAAAAAGAATTCTTGAGGGGTCAACCCTCGCAAATATGAGTTCTCCACAAA 1935524 Query 302718 ACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 |||||| || || |||| || |||| ||| |||||||| | |||| | Sbjct 1935525 ACCACGACTTTCAGGACCTAAATCTTC---CTTGAGAAAATGTGGCAGCGATCTGTCAAC 1935581 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || || || || ||||| || ||||| ||||| || |||| || | | ||||||| Sbjct 1935582 AAACCCATAAGGAATCCGCTTGCCTTCAACATTCTGTTGCCCCACACAAGCAGTCATCTG 1935641 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || ||||| | ||| ||||| || || ||| | ||||| Sbjct 1935642 GGATATATTAATGAAACTTCCCTTAGATCCTGCAGTAACCAT 1935683 Score = 98.7 bits (108), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 301831 GGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGA 301890 ||||||||| |||| || || ||| || || |||||||| ||||||| ||||| ||| Sbjct 1934620 GGAACACCAAGGGTGACATTCT--TTGCACTCA-CACCAGCATAGTGGAATGTATTAAGA 1934676 Query 301891 GTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCT 301950 || | || |||| ||||||||||| |||||| ||||| ||||| ||| ||||| Sbjct 1934677 GTCATCTGCGTAGCAGGCTCACCAATGGATTGTGCTGCAATACAACCAATCATCTCTCCA 1934736 Query 301951 GGTGCTACAA 301960 |||||||||| Sbjct 1934737 GGTGCTACAA 1934746 >seq941 Length=10723577 Score = 109 bits (120), Expect = 2e-18 Identities = 203/298 (68%), Gaps = 19/298 (6%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 || ||||||||||| || ||||||||||| ||| |||| | |||| | Sbjct 4054252 TGGTTAAGTGTTTGATCTCTTTCATCATTGAAACTTCTTCCA----------CGCTTCCC 4054203 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||||||||||| ||| |||||||| || | | || | ||| | || ||| Sbjct 4054202 T-----CCAACAGCATCAAGTTCATCAATGAATATTATGGATGGCGCATTCTTCCTTGCA 4054148 Query 289084 AT--TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 | || ||| | |||| | ||| | |||||| |||||| | | |||||||||| Sbjct 4054147 ACACTGAAAAGA--TCTCGAATACGAGCTGCTCCTCTTCCAACAAATAACTCTACAAATT 4054090 Query 289142 CAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 || ||| || ||| || ||||| || |||||| ||||| || || | || || | Sbjct 4054089 CACTAGCAGAAACTGAAAAGAATGGGACTCCTGCTTCTCCTGCCACAGCACGGGCTAGTA 4054030 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 ||| || |||||||| || |||||| | | ||| || ||| | |||| ||| || || Sbjct 4054029 ATGTTTTTCCTGTTCCTGGAGGTCCCACAAGTAGCACACCCCTAGGTAATTTGGCACC 4053972 >seq970 Length=9310200 Score = 100 bits (110), Expect = 8e-16 Identities = 221/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| | |||||| ||||| ||||| ||||||||||| | || |||| || || Sbjct 475953 CCTTGCTCTACCAATCGCATCTATTTCATCAATGAAAATTATACTAGGAGCYCACTGCCT 475894 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||||| | |||||| | | | |||| |||||| |||| || | ||| Sbjct 475893 TGCCTCTTGGAATAAATTTCTTACCCTTGCAGGACCAACGCCAACAAACATCTCCATAAA 475834 Query 289140 TTCAGAAGCGGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 || || | || | | || ||| || ||| | ||| |||||| || | |||| Sbjct 475833 ATCTGACCCAGAAA-TAGATAGAAATGGAACACCAGATTCACCTGCTGTGGCTTTTGCCA 475775 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 ||||||| |||||||| || || || || ||| | | | || ||||| | ||| |||| Sbjct 475774 GAAGTGTTTTACCTGTGCCTGGAGGGCCTACTAGCAAAGCACCTTTTGGAATTTTGGCCC 475715 Query 289259 CAGCAGA--CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 | |||| || |||||||| ||| |||| | || | |||| |||| | ||| | Sbjct 475714 C--CAGATCCTCATATTTCTTTGGGTTCTTAAGGAAGTGCACAAATTCCATGATTTCCTG 475657 Query 289317 TTTTGCCTCATCACATCCTGCTACATC 289343 || || |||||||| || || ||||| Sbjct 475656 CTTAGCTTCATCACAGCCAGCAACATC 475630 >seq558 Length=4929555 Score = 100 bits (110), Expect = 8e-16 Identities = 145/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| |||||||||||||| || || ||||| |||||||| | |||||| || | | Sbjct 349861 TACCCTTCCTCTTGCCACCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCA 349802 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| |||||||||||| || ||||| ||||| | ||||| |||| | | Sbjct 349801 GCATTGGAACAATACCATTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCAC 349742 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||| | || ||||| || || | |||| || ||| ||||||| Sbjct 349741 GAATGTTATGAACAGATACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCT 349682 Query 156226 TTACAGTATTGAAAATACCTTCAAT 156250 | | |||| | || || ||||| Sbjct 349681 TGAGGGTATCATATATGCCCTCAAT 349657 >seq937 Length=9237706 Score = 86.0 bits (94), Expect = 2e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | || || |||||||||||||| | ||||||||||| || ||||| ||| Sbjct 7408344 TGCAAAAAGGTCCCTAACACGGGATGCTCCCATACCAACATACAACTCCACAAACTCACT 7408403 Query 289146 AGC-GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | | | || ||||| | || | ||||| || || || ||| | || ||||||| Sbjct 7408404 GGCAGAACAACTG-ATGAAGGGAACCTCAGCTTCCCCAGCAACAGCCTTTGCTAGAAGTG 7408462 Query 289205 TCTTACCTGTTCCAGG 289220 |||||||||| ||||| Sbjct 7408463 TCTTACCTGTCCCAGG 7408478 >seq977 Length=5547227 Score = 84.2 bits (92), Expect = 6e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 |||| |||||| |||| || | ||| || || |||| | | || | ||| | |||| Sbjct 1953362 CCAACTCCAACAAACATCTCCATAAAATCGGACCCGGAAA-TAGATAGGAAGGGCACATC 1953420 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 | ||| ||||| ||| | || ||||| ||||| || |||||||| || || | | Sbjct 1953421 AGATTCTCCTGCAGTTGCTTTAGCTAGAAGCGTCTTTCCAGTTCCAGGAGGACCTACAAG 1953480 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 ||| | || ||||| | ||| || |||| | || |||||||| ||| |||| | | Sbjct 1953481 AAGAGCACCTTTTGGGATTTTGGCTCCCAACTC-CTCATATTTCTTGGGGTTCTTGAGGA 1953539 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | | |||| ||| | ||| | |||||||||||||| || |||||||| Sbjct 1953540 AGTGGACAAACTCCATGATTTCTTGCTTTGCCTCATCACAACCAGCTACATC 1953591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799138347923