Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq977 95.1 1e-14 >seq977 Length=5547227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | ||||| |||||||| || | || || | Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 110333 GATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || || ||| |||||| || || ||||| | || ||| || Sbjct 1026013 GATACTATTGATAATGTCAAGACA-AAGATTCAGGATAAGGAAGGGATCCCTCCGGACCA 1025955 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| | || | ||| || || ||| |||| || | | |||| |||||||||| || Sbjct 1025954 ACAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATAA 1025895 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||||||| || ||| | || ||||| Sbjct 1025894 CATTCAAAAAGAGTCCACGCTTCATCTGGTG 1025864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 |||||||| ||||||||||| |||| || || || |||||| | || || |||| | Sbjct 1049536 ATGCAAATTTTTGTCAAAACCCTAACTGGTAAGACGATTACCTTGGAGGTCGAGAGCTCG 1049595 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | | || || |||||| || || |||||| | || ||||| Sbjct 1049596 --GATACAATAGACAACGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATC 1049653 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || | || || | ||| || || ||| |||| || | |||||| |||||||||||| Sbjct 1049654 AGCAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCAGAACCTTGGCGGATTACA 1049713 Query 110451 ACATTCAAAAAGAATCTAC 110469 | ||||| || || ||||| Sbjct 1049714 ATATTCAGAAGGAGTCTAC 1049732 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| ||||| ||||| | || ||||| |||||| | || | ||| || ||| Sbjct 916931 AAGATTCAAGACAAGGAAGGTATCCCACCTGATCAGCAAAGATTGATCTTTGCTGGGAAA 916990 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCAC 110476 || |||||||||| |||| | || || ||||||||||||||||| || || || || Sbjct 916991 CAACTGGAGGATGGTCGAACCCTTGCTGACTACAACATTCAAAAAGAGTCCACCTTACAT 917050 Query 110477 ATGGTGTTAAGACTGCGAGGGGGAA 110501 | || || |||| || || |||| Sbjct 917051 CTTGTCTTGCGACTTCGTGGTGGAA 917075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836674154647