Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq940 147 3e-29 seq977 96.9 5e-14 >seq940 Length=8971605 Score = 147 bits (162), Expect = 3e-29 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || || || || |||||||| || ||||| || ||||| |||||||| Sbjct 8502326 GCCTCGGAGACCTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCA 8502267 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || || ||||||||| || || ||| | | ||||||||||||||||| | |||| Sbjct 8502266 TCTGAGGKGGCGAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGG 8502207 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||| || | |||| | |||||||||||||||||| ||||| ||||||||| Sbjct 8502206 TTTTCCCATTGACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCC 8502147 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || || || |||||||||||||| ||| | |||| | || || |||| Sbjct 8502146 TCTGCTTTCTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACA 8502098 Score = 141 bits (156), Expect = 1e-27 Identities = 204/286 (71%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| || ||||| ||||| | |||||| || || || ||||| |||||||| || Sbjct 8502611 CCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAGAAT 8502552 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||||||| |||||| |||| | ||||| ||||| | || ||| || Sbjct 8502551 ATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTCCGCCGTC---- 8502496 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCG-AGGGCACCGTGTCGATGGC 794558 |||||| | ||||||| ||||| || ||| || | || | || || || || Sbjct 8502495 --GATCCATCGGAGGGCCCACTTGGCCTTCTTT-TCAACGCAAGGTATGGTCTCCATTGC 8502439 Query 794559 GCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 794618 | ||||||| || ||||||| | |||||||| | |||| |||| | ||| || Sbjct 8502438 GTGAAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATA 8502379 Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| || || |||||||||||||| || |||||||| || ||| Sbjct 8502378 CATCTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAG 8502333 >seq977 Length=5547227 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| ||||| ||||| || || |||||||||||| | |||| ||| || ||| | Sbjct 1587176 TTGGTAACGGCTTTGGTCCCTTCAGAGACGGCGTGCTTTGCCAATTCACCAGGCAACACA 1587235 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGCGC 1485593 || | ||||||||||||||||| |||| | ||| || | || |||||| ||| || Sbjct 1587236 AGTCTGACGGCGGTCTGGATCTCACGGGAGGTGATGGT-TGGCTTCTTGTTGTAGCGAGC 1587294 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 || || ||||| || | || || | || ||||||| || |||||||| Sbjct 1587295 AAGACGAGAAGCCTC-CTGAGCAAGCTTCTCAAAGATATCGTTGATGAAGCTGTTCATGA 1587353 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | || |||| || || | ||| ||||| ||||| |||||||||||| Sbjct 1587354 TGCCCATTGCCTTACTGGAAATTCCAATGTCAGGGTGGACCTGTTTGAGCACCTTG 1587409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916142259304781