Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq977 122 7e-23 seq964 86.0 5e-12 seq937 86.0 5e-12 >seq977 Length=5547227 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||||||||| |||| || || || |||||| | || ||| ||| | Sbjct 1049536 ATGCAAATTTTTGTCAAAACCCTAACTGGTAAGACGATTACCTTGGAGGTCGAGAGCTCG 1049595 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||||| ||||| |||||| | || |||||| Sbjct 1049596 -GATACAATAGACAACGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCA 1049654 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||| |||| |||| || ||| ||||||| ||||| Sbjct 1049655 GCAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCAGAACCTTGGCGGATTACAA 1049714 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| ||||||||||| | || | || ||||| Sbjct 1049715 TATTCAGAAGGAGTCTACCCTACATCTCGTTTTGAG 1049750 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||||||||| |||| || || || ||||| | || ||| ||| Sbjct 1026301 ATGCAAATTTTTGTCAAAACCCTAACTGGTAAGACGATTACGTTGGAGGTCGAGAGCT-C 1026243 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||||| ||||| ||||| | || ||||| Sbjct 1026242 TGATACGATAGACAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATTCCTCCTGATCA 1026183 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||| ||||||||| || ||| ||||||| ||||| Sbjct 1026182 GCAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAGGACGGCAGAACCTTGGCGGATTACAA 1026123 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||| || |||||||| || | || | || ||||| Sbjct 1026122 CATCCAGAAGGAGTCGACCCTTCATCTCGTCTTGAG 1026087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||| |||| ||||| || ||||| | || |||| | Sbjct 1049308 ATGCAAATATTTGTTAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGGGTTCT 1049367 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || ||| ||||| || || | || ||| ||| Sbjct 1049368 GACACGATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGGATTCCTCCGGACCAG 1049427 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||| ||||||||| | ||| | || || || || Sbjct 1049428 CAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGAACTCTTGCCGATTATAAT 1049487 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||||||||||| || | || |||| ||||| Sbjct 1049488 ATTCAAAAGGAGTCGACTCTTCATCTGGTCTTGAG 1049522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | || || |||||||| || | || || | Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || ||||||| ||||| ||||| | || ||| || Sbjct 1026013 GATACTATTGATAATGTCAAGACAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAA 1025954 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| || || ||| |||| |||| | ||| ||||||| || ||| Sbjct 1025953 CAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATAAC 1025894 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||| ||||| ||| | || ||||| || Sbjct 1025893 ATTCAAAAAGAGTCCACGCTTCATCTGGTGCTG 1025861 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||||||| |||| ||||| || ||||| | || ||| | | Sbjct 1026529 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGAGTTCC 1026470 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || ||| ||||| || ||| | || ||| ||| Sbjct 1026469 GACACGATTGACAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCTCCGGACCAG 1026410 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | || || || ||| ||||||||| | || | || || || || Sbjct 1026409 CAGAGACTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGTACTCTTGCCGATTATAAT 1026350 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||||||||||| || | || | || ||||| Sbjct 1026349 ATTCAAAAGGAGTCGACTCTTCATCTTGTCTTGAG 1026315 >seq964 Length=1826015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || || || || || || || || |||||||| | || |||| ||| Sbjct 764273 AATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACCATTACTCTTGAGGTGGAGAGCTC 764214 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || || ||| ||| || || || || | || ||||| Sbjct 764213 T-GATACTATTGATAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCACCGGATC 764155 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | || || || ||||| ||||| | | || | || ||||||| Sbjct 764154 AGCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTGCTGACTACA 764095 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 | || |||||||||||||| ||||| ||||| |||| || |||| |||| Sbjct 764094 ATATCCAAAAGGAGTCTACACTGCACTTGGTGCTGAGGTTAAGAGGAGGAA 764044 >seq937 Length=9237706 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||| ||| | || || | Sbjct 195868 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTGGAGGTCGAATCC 195927 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || | | | | || || ||||| ||||| |||||| | || ||| Sbjct 195928 TCCGACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGCATCCCACCTGAT 195987 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||| | || ||||| ||||| ||||| | || ||| | ||||| || Sbjct 195988 CAGCAGCGGCTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCAGAACCCTAGCGGATTAT 196047 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || ||||||||||| ||||| |||| | | ||||| || || Sbjct 196048 AACATCCAGAAGGAGTCTACCCTGCACCTGGTCCTCCGCTTGCGTGGTGG 196097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398872040776531