Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq977 129 6e-25 seq964 129 6e-25 seq937 114 1e-20 seq959 104 2e-17 seq978 87.8 2e-12 seq940 82.4 7e-11 >seq977 Length=5547227 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || || |||||| | | || ||| ||||||||| | Sbjct 1026554 ATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACC-GTCCTCGAGTT 1026612 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| | || || |||||||| |||||||||||||| |||||||| ||||| Sbjct 1026613 GTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCT 1026672 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | || |||| ||| || |||| |||| |||||| |||| Sbjct 1026673 TAGCCTTGACATTATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTTACCGG 1026732 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || |||||||| Sbjct 1026733 TTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||| ||||| ||||| ||||||||||| ||| || ||| || | ||| Sbjct 1049739 ATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCCAAGGTTCTGCCGTCTTCCAACTG 1049680 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || |||||||| || ||||| ||||||||||| || ||||| Sbjct 1049679 CTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTT 1049620 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | || | || || | | ||| || || | ||| | || || || || Sbjct 1049619 TGCCTTCACGTTGTCTATTGTATCCGAGCTCTCGACCTCCAAGGTAATCGTCTTACCAGT 1049560 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| ||||| Sbjct 1049559 TAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| |||||||||||| | | ||| | ||||| ||||| Sbjct 1049967 ATGCAGGGTGGACTCCTTCTGGATATTGTAATCGACTAGAGTGCGCCCATCCTCAAGCTG 1049908 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || |||| ||| || || || ||||| || |||||||| ||||| Sbjct 1049907 CTTTCCGGCGAAGATAAGCCTCTGTTGATCAGGGGGGATCCCCTCCTTGTCCTGAATCTT 1049848 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | | || | || || | | |||||| || | || | || || || || Sbjct 1049847 GGCTTTCACATTGTCTATGGTATCAGAGCTCTCCACCTCCAGTGTAATTGTCTTCCCAGT 1049788 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||||||||| Sbjct 1049787 CAATGTCTTCACAAAAATCTGCAT 1049764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGC 133514 ||| | ||||||||||||||| || || |||||| | | ||| ||| |||||| || Sbjct 4465797 ATGGAGGGTGGACTCTTTCTGAATGTTATAATCGGCAA--GTGTACGTCCGTCCTCCAGT 4465740 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||| | || | | | || || ||||| || || |||||| |||| ||||| || ||| Sbjct 4465739 TGCATCCCGGAGAAGATAAGGCGCTGGTGATCCGGAGGGMTGCCCTCCTTATCTTGGATT 4465680 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || || | ||| || |||| || ||||| ||||| Sbjct 4465679 TTGGCCTTCACGTTATCGATGGTATCTGAACTCTCAACCTCGAGAGTTACGGTCTTGCCA 4465620 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || | || ||||| |||||||| Sbjct 4465619 GTTAGGTTCTTCACGAAGATCTGCAT 4465594 >seq964 Length=1826015 Score = 129 bits (142), Expect = 6e-25 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||||||| ||| ||| ||| ||||| || Sbjct 764523 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGACCY-TCCTCCAG 764581 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | || ||||||||| ||||| ||||| ||||| || ||| Sbjct 764582 CTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGGAT 764641 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||| | | |||||| || | ||||| || ||||| Sbjct 764642 CTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTCTCCACCTCCAAGGTGATTGTCTTGCC 764701 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| || ||||| || |||||| Sbjct 764702 GGTGAGAGTCTTGACGAAGATTTGCATG 764729 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || |||||||| | | || ||| | || || || Sbjct 764751 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTACGACCA-TCTTCCAG 764809 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | || ||||||||| || || ||||||||||| || || Sbjct 764810 CTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGAAT 764869 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | ||| || || | ||||| ||| || || Sbjct 764870 CTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTTCC 764929 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || || ||||| Sbjct 764930 GGTGAGGGTCTTAACAAAGATTTGCAT 764956 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || | | ||| | | | ||||||||||||||||| Sbjct 764076 GTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTGCGGCCA-TCCTCGAGCTGCTTGCC 764134 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || | || |||||| || || ||||| || |||||||| ||| ||||| || Sbjct 764135 AGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCCTCCTTGTC-CTGAATTTTTGCCT 764193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || || | | |||||| || | || | ||| || ||||||| | Sbjct 764194 TCACATTATCAATAGTATCAGAGCTCTCCACCTCAAGAGTAATGGTCTTCCCGGTCAAGG 764253 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 764254 TCTTCACGAAGATCTGCAT 764272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || || || || | | ||| | |||||||||| Sbjct 764295 AAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAGCAAGGGTGCGCCCGTCCTCGAGC 764354 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | || ||||||||| || ||||| ||||||||||| ||| Sbjct 764355 TGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCTTCCTTGTC-TTGAAT 764413 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | |||| || || | ||| || || | ||||| ||| || || Sbjct 764414 TTTAGCTTTCACATTGTCAATGGTATCAGAACTCTCGACCTCCAGGGTGATGGTCTTTCC 764473 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 764474 AGTGAGGGTCTTCACGAAGATCTGCAT 764500 >seq937 Length=9237706 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || || ||||| | | || |||||||||||||| || Sbjct 196068 GGTAGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCGAGCTGCTTACC 196009 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || ||||||||||| || || |||||||||||||| || |||||| ||| Sbjct 196008 GGCGAAGATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTAGCCTT 195949 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||||| || || || || | ||| | ||| || || || || || Sbjct 195948 GACATTGTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTACCCGTTAGGGT 195889 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 195888 TTTCACGAAGATCTGCAT 195871 >seq959 Length=5381930 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || |||||||| ||||| || | | || ||| ||||||||||| || Sbjct 731804 GTGGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTCGAGCTGCTTCCCG 731745 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| || |||||||| || || ||||| |||||||| ||| || |||| Sbjct 731744 GCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTG 731685 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || || | ||||| || || || || || ||| Sbjct 731684 ACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTT 731625 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 731624 TTGACGAAAATCTGCAT 731608 >seq978 Length=8767375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || |||||||| | | ||| | ||| || ||| Sbjct 3246097 AAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGC 3246156 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | || ||||||||| || ||||| || ||||| || ||| Sbjct 3246157 TGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATC-TTGAAT 3246215 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | |||| || || | ||| || || | || | ||| || || Sbjct 3246216 TTTGGCTTTCACGTTGTCAATGGTATCAGAACTCTCGACTTCCAGAGTAATGGTCTTTCC 3246275 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||||||||| Sbjct 3246276 AGTGAGAGTCTTCACGAAAATCTGCAT 3246302 >seq940 Length=8971605 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 |||||| ||||| || || ||||| || ||||| || | |||||| || |||| Sbjct 8502672 GCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTCAA 8502613 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 |||||||| | || |||| | | ||||| ||| ||| || ||||| ||||| Sbjct 8502612 ACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAGAA 8502553 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACG--TCGCCGTCTTGCTG 120819 | ||||| ||| ||||||||||||| ||||| || || | || || || | Sbjct 8502552 TATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTCC-----GCCG 8502498 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 |||||||| | |||||||| |||||| || Sbjct 8502497 TCGATCCATCGGAGGGCCCACTTGGCCTTCTT 8502466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414884137960