Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq977 100 2e-16 seq978 96.9 2e-15 seq964 82.4 5e-11 >seq977 Length=5547227 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| ||| || ||| ||||||||| ||||| ||||| | Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| ||||| || || || ||||| ||||| | || || || | || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || ||| | |||| ||| || || ||| || Sbjct 1025967 ATCCCTTCCTTATCCTGAATCTT-TGTCTTGACATTATCAATAGTATCAGAACTTTCAAC 1026025 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| |||||||| || | ||||| ||||||||||||||| Sbjct 1026026 CTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCATA 1026074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33529 CTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTG 33588 ||||| | |||||| ||||||||| || || || ||||| ||||| | ||||| Sbjct 917751 CTCAATCACAACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTC 917692 Query 33589 CGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCT 33648 | | || || || ||||| || |||||||||| |||||||||||| | || | ||| Sbjct 917691 CTGCCATCTTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCT 917632 Query 33649 TCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAAC 33707 |||||||| ||| || | | |||| ||| | |||||| || || || | Sbjct 917631 TCTTTGTCCTGAATCTT-GGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAA 917573 Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || || || || |||||||||||||| Sbjct 917572 AGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 917531 >seq978 Length=8767375 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||| || || ||| || || || |||||||| |||| Sbjct 3246303 ACCACCTCTCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 3246362 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | ||| ||||||||||| |||| | |||||| ||| | || Sbjct 3246363 TAGAGTGCGACCGTCCTCGAGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 3246422 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || | || |||| ||| | ||||||| || | Sbjct 3246423 AATTCCTTCCTTATCCTGTATCTT-GGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAA 3246481 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||| || |||||| Sbjct 3246482 CTTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCATA 3246531 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||| || || || ||| ||||| ||||||||||||| Sbjct 3246531 ACCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGC 3246590 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || | ||| |||||||| || |||| | ||||||||| | || Sbjct 3246591 AAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGG 3246650 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || || || |||| ||| | ||||||| || | Sbjct 3246651 GATTCCTTCCTTATCTTGGATCTT-TGCTTTGACATTGTCGATGGTGTCGGAGCTCTCGA 3246709 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || | || || || ||||||||||| Sbjct 3246710 CCTCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 >seq964 Length=1826015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || ||||||||||| | ||| || || | || || Sbjct 764747 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTACGACCATCTTC 764806 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || ||||| || |||||||| | |||||| ||| | || | ||||| || || Sbjct 764807 CAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTG 764866 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || | | |||| ||| | ||||||| || || || | ||||| || | Sbjct 764867 AATCTT-AGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCT 764925 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || |||||||| |||||| Sbjct 764926 TTCCGGTGAGGGTCTTAACAAAGATTTGCATA 764957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700078047680