Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq977 89.7 4e-13 seq946 84.2 2e-11 >seq977 Length=5547227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || |||||||| ||||||||||| |||| || | | Sbjct 917531 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 917590 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | | || || || ||| |||||||||||| | || |||||| Sbjct 917591 GACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAG 917650 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || |||| ||| |||||||| || |||||| | || | | ||||| ||| Sbjct 917651 CAGCGTCTGATTTTTGCTGGCAAACAGTTTGAAGATGGCAGGACACTTGCAGATTATAAC 917710 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || || ||||| || |||||| Sbjct 917711 ATCCACAAGGAATCAACTCTACAT 917734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGA--AACAGAACCCG 106317 |||||||||||||| ||||| | ||||| ||||| |||||| |||| ||| | || Sbjct 1049536 ATGCAAATTTTTGTCAAAACCCTAACTGGTAAGACGATTACCTTGGAGGTCGAGAGCTCG 1049595 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 ||| | | | | | ||||| ||| ||| || || |||||| | || |||| Sbjct 1049596 --GATACAATAGACAACGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATC 1049653 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 | || | || || | ||| || || || || ||||| | ||| ||| ||||||| Sbjct 1049654 AGCAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCAGAACCTTGGCGGATTACA 1049713 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 | || || || || ||||| |||||| | || |||||| | || || || Sbjct 1049714 ATATTCAGAAGGAGTCTACCCTACATCTCGTTTTGAGGCTTCGTGGTGG 1049762 >seq946 Length=5553863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 || |||||||| | || |||||| || || || |||| ||| || || ||||| ||| Sbjct 333560 GAMAAAGAAGGTATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 333501 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||| ||| ||| || || || ||||||||||| ||||| || || || ||| Sbjct 333500 GATGGCCGTACTTTGGCCGACTATAATATCCAAAAAGAATCAACACTTCACTTGGTTTTG 333441 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 333440 AGGCTCAGAGGAGGA 333426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402324799579232