Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq964 136 4e-27 seq977 127 2e-24 seq937 107 2e-18 seq978 95.1 1e-14 seq976 91.5 1e-13 >seq964 Length=1826015 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || ||||||||||||||| Sbjct 764502 CCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 764561 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| ||||||| ||||||||||| |||| Sbjct 764562 AAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGA 764621 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || |||||| ||| |||| || || | | |||| | | ||||| |||| || Sbjct 764622 ATGCCCTCCTTATCCTGGATC-TTGGCCTTAACGTTGTCGATTGTGTCAGAGCTC---TC 764677 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || || | ||| || || || || ||||| Sbjct 764678 CACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 764728 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | |||||| || | || |||||| || ||||||||||| || Sbjct 764730 CCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 764789 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || ||||||| ||||||||| | ||| Sbjct 764790 AGAGTACGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 764849 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||||| ||| ||||| ||| | | | | | ||||| |||| || Sbjct 764850 ATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCA 764906 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| || || || || | || || ||||| || ||||| Sbjct 764907 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 764956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||| || | |||| |||| || |||||||| || ||||| Sbjct 764994 TCCTTTTGAATGTTGTAATCAGCAAGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAG 765053 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||||| | |||| | ||||| || ||||||| ||| | | | Sbjct 765054 ATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATCTTTGCCTTAACATTG 765113 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||| | || || || || || || | || || Sbjct 765114 TCTATGGTGTCGGAGCTC---TCGACCTCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTA 765170 Query 35723 ACAAATATCTGCATTCTGT 35741 ||||| ||||||| ||||| Sbjct 765171 ACAAAGATCTGCA-TCTGT 765188 >seq977 Length=5547227 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| || | ||| | || |||||| || ||||||||||| ||| Sbjct 1026075 CCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1026134 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| |||| |||| |||||| || ||||| |||| |||||||| || | |||| Sbjct 1026135 AAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGA 1026194 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| || |||||| ||||| |||| | | ||| || |||| || Sbjct 1026195 ATCCCTTCCTTATCTTGAATCTTTGCCTTCA-CGTTGTCTATCGTATCAGAGCTC---TC 1026250 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||| ||||| ||||| || | ||||| ||||| || ||||| Sbjct 1026251 GACCTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||| |||| ||| | || |||||||||||| || |||||||| Sbjct 1049534 CCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1049475 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| |||| |||||| || ||||| || | | ||||||||||| |||| Sbjct 1049474 AGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGA 1049415 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| ||| ||| | ||| | | | | | |||||| || || Sbjct 1049414 ATCCCCTCCTTATCC-TGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAAC 1049356 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || ||||| || || || | |||||| |||||||| ||||| Sbjct 1049355 CTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || ||||| ||| | ||| ||| ||||||||||| ||||| ||| Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| |||| |||||| || ||||| ||||| | || ||||||| ||| Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | | | | || || ||| ||| Sbjct 1025967 ATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACC 1026026 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| |||||||| || | ||||| ||||| |||||||| Sbjct 1026027 TCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| || | ||| | || |||||||||||| || |||||||| Sbjct 1026303 CCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1026362 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || || | | ||||||||||| |||| Sbjct 1026363 AGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGA 1026422 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCG---CTCGATTC 35685 | || |||||| | | ||| ||| || | |||| | | ||||||| ||| || Sbjct 1026423 ATGCCCTCCTTAT-CTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTC---TC 1026478 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || ||||| || || || | |||||| ||||| |||||||| Sbjct 1026479 AACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| ||||| |||| || || | || || || ||||| || || || Sbjct 1025655 TCCTTCTGGATGTTATAATCAGCCAGAGTACGGCCATCTTCAAGTTGCTTCCCAGCGAAG 1025714 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||| |||| ||||| | |||||||||| |||||| ||||| ||| Sbjct 1025715 ATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTCAC-GTT 1025773 Query 35666 GCC-ACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | || || |||| || ||||||| ||| ||||| || || ||||| ||||| Sbjct 1025774 GTCTATGGTATCTGAGCTC---TCAACCTCCAGCGTAATCGTCTTCCCGGTCAATGTTTT 1025830 Query 35722 CACAAATATCTGCAT 35736 || ||||||||||| Sbjct 1025831 AACGAATATCTGCAT 1025845 Score = 102 bits (112), Expect = 7e-17 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||| |||||||| | ||| || |||| || || || || || || || Sbjct 1026566 CTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAA 1026625 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | ||| | || ||||||||| |||||| ||| | | | Sbjct 1026626 GATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 1026685 Query 35665 TGCCACCGTGTCG---CTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || ||| ||| || ||||| | ||||| |||||||| || | ||||| Sbjct 1026686 ATCGATGGTATCGGAACTC---TCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTT 1026742 Query 35722 CACAAATATCTGCATTCT 35739 |||||| |||||||| || Sbjct 1026743 CACAAAGATCTGCATCCT 1026760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||| | || ||||| ||||| ||||| || || Sbjct 917529 CCACCCCTCAATCGCAGCACCAAATTAAGAGTTGATTCCTTCTGAATTTTGTAGTCAGCA 917470 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | | ||| | | || || || ||||| || ||||||||||| || |||||||| | |||| Sbjct 917469 AGGATTCTCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAGCGTTGCTGGTCTGGAGGA 917410 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA---TTCC 35686 | || ||||||| | ||| ||| |||| | ||| || | || || || ||| Sbjct 917409 ATGCCTTCCTTGTTC-TGAATTTTAGCTTTAACATTGTCAAC-TGCATCT-GAGCTTTCG 917353 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || ||||| || || | ||| |||||||| ||||| || Sbjct 917352 ACTTCAAGGGTAATGGTTTTCCCAGTAAGAGTCTTCACAAAGATCTGTAT 917303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | ||| || | |||||| || ||| |||||||||||||| || | Sbjct 917075 TTCCACCACGAAGTCGCAAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCAG 917016 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | |||||| | || ||||| || || || ||||| ||||| | ||||| || | | Sbjct 917015 CAAGGGTTCGACCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGTG 916956 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 | | | |||||||| |||||| ||| | | | | ||||| ||| | Sbjct 916955 GGATACCTTCCTTGTCTTGAATCTTTGCCTTGGCATTATCGATGGTGTCAGAACTC---T 916899 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||| | |||||| || || || || | || || ||||| || |||||| Sbjct 916898 CAACCTCAAGCGTGATGGTCTTGCCTGTGATGGTCTTAACAAAAATTYGCATTC 916845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 16/230 (7%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | ||| || || | ||| || ||| |||||||||||| |||||||| || Sbjct 4466246 CCACCGCGGAGCCTTAAAACAAGATGCAAAGTAGACTCCTTTTGAATCTTGTAATCACCC 4466187 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || |||| |||||| || || || ||||| |||| || || | |||| Sbjct 4466186 AA----------TCCTCCAACTGCTTTCCGGCGAAAATCAAGAGCTGTTGATCGGGAGGA 4466137 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || || ||||| ||||| ||| | | | | | || ||| |||| || Sbjct 4466136 ATGCCTTCTTTGTCTTGAATCTTGGCCTTAACATTATCAATCGCGTCAGAGCTC---TCG 4466080 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||| | ||| ||||| || | ||||||||||| || ||||| Sbjct 4466079 ACTTCCAACGTTACCGTCTTACCAGTTAGGGTTTTCACAAAGATTTGCAT 4466030 >seq937 Length=9237706 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | | |||| || | ||| |||||| || ||||| ||||| || Sbjct 196097 CCACCACGCAAGCGGAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTATAATCCGCT 196038 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || ||||||||||| || || || | ||||||||| || | || Sbjct 196037 AGGGTTCTGCCATCCTCGAGCTGCTTACCGGCGAAGATAAGCCGCTGCTGATCAGGTGGG 195978 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| ||| | | | | | |||||| ||||| ||| Sbjct 195977 ATGCCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCGACC 195918 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || |||||||| | |||||||| || |||||||| Sbjct 195917 TCCAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 195871 >seq978 Length=8767375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | || ||| |||| || |||||||| || ||||| Sbjct 3246111 CTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAA 3246170 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| ||||||||| | || | | |||||| | | ||| ||| |||| || Sbjct 3246171 TATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTAT-CTTGAATTTTGGCTTTCACGT 3246229 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | || || ||| || || |||| || || || || || || | ||| | Sbjct 3246230 TGTCAATGGTATCAGAACTC---TCGACTTCCAGAGTAATGGTCTTTCCAGTGAGAGTCT 3246286 Query 35721 TCACAAATATCTGCAT 35736 |||| || |||||||| Sbjct 3246287 TCACGAAAATCTGCAT 3246302 >seq976 Length=16402300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| |||||||| ||| | || ||||||||||| || ||||| Sbjct 198808 CCTTTCTGGATGTTGTAATCAGCCAAGGTACGCCCATCCTCCAGCTGCTTTCCAGCAAAA 198867 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAA 35630 ||||| ||||||||||||| |||| Sbjct 198868 ATCAAGCGCTGCTGGTCCGGCGGAA 198892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788083413320