Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq940 138 2e-27 seq558 127 3e-24 >seq940 Length=8971605 Score = 138 bits (152), Expect = 2e-27 Identities = 385/587 (66%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 |||||| |||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 8502675 TAAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGT 8502616 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAA 39731 | || |||||||| || || || || | ||||||||| || |||||| | || || | Sbjct 8502615 CAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGA 8502557 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT 39791 |||| || || || || ||||| || || | | ||||| || || ||| | Sbjct 8502556 AGAATATCCCCTCGACGCAAGCAAAGGCGACCA--AACGCTCCGCAA-----ATGATTCT 8502504 Query 39792 -----GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || ||||| | ||||| | || ||||| | || ||||| || || || Sbjct 8502503 CCGCCGTCGATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCC 8502444 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || || | |||||| || || || || || |||| || | || | || || Sbjct 8502443 ATTGCGTGAAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGY 8502384 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||||||| || ||||| |||||||| || || || || || ||||| || | || Sbjct 8502383 CTATACATCTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCC 8502324 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | | || || ||| |||| | | || | ||| || || || ||||| Sbjct 8502323 TCGGAGACCTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCT 8502264 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 | ||| |||||||||| || | ||||||| | || || || || | || Sbjct 8502263 GAGGKGGCGAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTT 8502204 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| | | || || | || | || || || || || ||||| || || |||||| Sbjct 8502203 TCCCATTGACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCT 8502144 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || || |||||||| | ||| || | | | ||||| |||||||| || Sbjct 8502143 GCTTTCTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACAT 8502097 >seq558 Length=4929555 Score = 127 bits (140), Expect = 3e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | ||||||| ||| | || |||||||| |||| ||||||| Sbjct 349844 CCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCAGCATTGGAACAATACCA 349785 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| |||||||||||| | || ||||| ||| || |||| Sbjct 349784 TTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCACGAATGTTATGAACAGAT 349725 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | ||| || || | || |||||||| Sbjct 349724 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCTTGAGGGTATCATATATG 349665 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| || ||| ||||| | || ||||||||| Sbjct 349664 CCCTCAATGCTGTCTTCTTTCATGCACACCAGGAAACAGCTA 349623 Score = 89.7 bits (98), Expect = 7e-13 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 |||||||||||||| ||||| || | ||| ||||| || ||||| |||| ||| ||| Sbjct 350379 TCTTTTTCATATTGGGTATAAAGTCTTTCAAATTCTTCACCCCAGCAATCAGCCAGACCA 350320 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCA-TCATCCTTA----ACTCGTTTCA 69604 ||| |||||||||||| | || ||||| | || || ||||| || | | || Sbjct 350319 GGAGCTTCATTTGGACAGAACACAGACCATTCCCCATTCCCCCTTATCTCACCCTCTGCA 350260 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 |||| ||||| || | ||||||| || ||| ||||||| Sbjct 350259 TAAAGAGATCAGGCACCCAAAGACATAGAAA-AGATCTC 350222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900393953560