Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq977 84.2 2e-11 seq959 82.4 6e-11 >seq977 Length=5547227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | || | ||| | || || || || ||||| || || ||| Sbjct 1049308 TGCCCCCGCGGAGTCGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGG 1049249 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || |||| ||||| || || |||||| ||||||| ||||| ||||| || | Sbjct 1049248 CGAGCGTCCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGATCTGGAG 1049189 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| |||||| || | | || | || || | || | Sbjct 1049188 GAATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATGGTATCAGAACTCTCGA 1049129 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| || || ||||||||||| |||||||| Sbjct 1049128 CCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATTTGCAT 1049080 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || ||| || | ||| | || || || ||||||||||| || ||| Sbjct 1026303 CCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1026362 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || | ||| || || ||| | ||||| | ||| || ||||| || Sbjct 1026363 AGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGA 1026422 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| || || || | | | || | ||||| | ||||| Sbjct 1026423 ATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACC 1026482 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| || |||||||| |||||||| |||||| Sbjct 1026483 TCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCATA 1026530 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT-CGCT 27079 || || || | || ||| || | ||||| ||||| || || ||||||||||| | ||| Sbjct 1049762 CCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCC 1049703 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || ||||||| | ||| || || || | || || ||||| |||||||| || Sbjct 1049702 AAGGTTCTGC-CGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGG 1049644 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||| |||| | | |||| || || | | || || Sbjct 1049643 AATGCCTTCCTTATCCTGAATCTTTGCCTTCACGTTGTCTATTGTATCCGAGCTCTCGAC 1049584 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || || || ||||| ||||| ||||||||| Sbjct 1049583 CTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATA 1049535 >seq959 Length=5381930 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| ||| ||| || ||||||||||||| || || Sbjct 731804 GTGGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGC-CGTCTTCGAGCTGCTTCCC 731746 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| || || ||||| || | ||||| || || ||| ||| || Sbjct 731745 GGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTT 731686 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | || || || || || |||| || ||||| || || Sbjct 731685 GACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGT 731626 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| || || || |||||| Sbjct 731625 TTTGACGAAAATCTGCATA 731607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929329868648