Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq595 109 7e-19 seq957 107 2e-18 seq940 91.5 2e-13 seq558 86.0 8e-12 >seq595 Length=996587 Score = 109 bits (120), Expect = 7e-19 Identities = 228/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||||||||| | ||||| || || |||| || | ||||||||| | ||||| Sbjct 860796 TCAAGGATATCTGCACGATTGGTTGCTGCAACTACAATAATGCCAGTGTTTCCTTCAAAA 860855 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | |||||||| || ||||| ||| || | | Sbjct 860856 CCATCCATTTCTGTCAACAGCTGGTTGAGAGTTTGTTCCCTTTCATCGTTTCCT--CCTC 860913 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 860914 CAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 860973 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | || || ||| | | || ||||| || || | ||||| |||||||||| Sbjct 860974 GAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACACGAGAAGCACCAACACCAACAA 861033 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| ||||| | || | | || | || || || || || || |||||| || Sbjct 861034 ACATCTCAACAAACTCTGAGCCGGA-AATTGAGAAAAAAGGAACCCCTGCTTCACCAGCA 861092 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || ||| | | ||||||||||||||||| Sbjct 861093 ATTGCCTTGGCTAACAATGTCTTTCCCGTACCTGG 861127 >seq957 Length=6255442 Score = 107 bits (118), Expect = 2e-18 Identities = 195/283 (69%), Gaps = 16/283 (6%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| ||||||||||||||||||||| | Sbjct 5581965 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATTTCC---- 5581910 Query 11600 ATACCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| || ||| ||| | |||| | ||||| ||||||||||||||||| || ||| Sbjct 5581909 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCAATAAATACA 5581852 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || || | || | ||||| | ||| | || || || |||||| Sbjct 5581851 ATRCAAGGGGCCTTAGCCTTTGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACA 5581792 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATT 11771 || ||||||| ||||||||| | || || |||| || | |||||| ||| | | Sbjct 5581791 CCCACAAACAACTCCACAAATTCTGAAGC--TGCACAGGAAAAGAATGGCACACCGGCCT 5581734 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||| || | |||| || | ||||| || ||||| || || Sbjct 5581733 CACCGGCAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGG 5581691 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 11500 ATTAGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGT 11556 |||||| || |||| ||| | || ||||| | || || ||| ||||||||||| || Sbjct 155425 ATTAGTTGCAGCAAGAACAATAACTCCAGTAT--TTCCAGTGAAA-CCATCCATCTCTGT 155369 Query 11557 GAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGC 11615 || | || || | |||||| ||||| ||||||||| || | || ||||| || | Sbjct 155368 CAGCAGCTGGTTTAGTGTTTGCTCTCTTTCATCATTTCCTCCACCTA-TACCAGTACCTC 155310 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 ||| | || || ||||||||||| ||||||||||| | ||||| ||| || | Sbjct 155309 TCTGCCTCCCAACAGCATCAATCTCGTCAATGAAGACCAAGCATGGCGAATTGTCTTTAG 155250 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727 | | | || | ||| | || || || || || |||||||||||||| Sbjct 155249 CCTTGTTGAATAAATCCCTCACTCTCGAAGCCCCAACTCCAACAAACATCTC 155198 >seq940 Length=8971605 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||||||||||||||| || || | || || |||||| | ||| ||||| || || Sbjct 8502656 TGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTCAAACCGGGCATTAGCCCG 8502597 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||| |||||| | || ||||| || ||| |||||||| || ||||| || || Sbjct 8502596 CGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCCTCGACGCAA 8502537 Query 122791 GCAAACGC 122798 ||||| || Sbjct 8502536 GCAAAGGC 8502529 >seq558 Length=4929555 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTA 111287 ||| || || |||||||||||||| || ||||| || || | | || |||||||| | Sbjct 350820 TGGCAGAGCAATTGATGCCAAATTACACACAGCAGTTTC-TGTTGGGCTAGTGTACTCAA 350762 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCT 111347 ||||| ||||||||||| ||| ||| || ||||| | |||| ||||| ||||| Sbjct 350761 TGATTTCAGTACATAAGTTAGAAGACTTGATAGTCCCAAGGTTCTGCTGGTTGCTCTTTC 350702 Query 111348 TGTTGCACGCATCCTTGTAGAGCATG 111373 |||||| | |||||| |||| ||| Sbjct 350701 GGTTGCAAGAATCCTT-AAGAGTATG 350677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || || || ||||||||||| ||||| || | ||| || | ||| | ||| Sbjct 349519 TGGGGCCTGGGAGTTCCAGCATTGAAAAGGGTAGGGGATGCATGGGTAAACCATCGTTGA 349460 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | |||| ||| || |||| ||||| || ||| |||||| || | | Sbjct 349459 GACATCAAATGATATGTTCTGATAG-CAGATTCAATATCATCCTTGTGGATTCCAACAGA 349401 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| |||||| |||| | | | || | || || || | || | Sbjct 349400 TACCCTCATCAACATGTGCTGTGGCCTTTCTACAACTTTTCCTTGGA-CCTTTAAGAGGT 349342 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||| ||||||| ||||||||| || | ||| |||| || Sbjct 349341 AAGACCTCTCAAGTGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCG 349293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024314458400