Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq940 107 2e-18 seq957 84.2 3e-11 >seq940 Length=8971605 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 ||||||||||| || || ||||| | || ||||||||| || ||| ||||| || || Sbjct 8502656 TGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTCAAACCGGGCATTAGCCCG 8502597 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||| ||||| || ||||| ||||| || |||||||| |||||||| || || Sbjct 8502596 CGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCCTCGACGCAA 8502537 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || || | | |||||| ||||| || Sbjct 8502536 GCAAAGGCGACCAAACGCTCCGCAAATGA 8502508 >seq957 Length=6255442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 245/373 (66%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| |||||||| || ||||| || |||||||| | |||||||| || | Sbjct 5581965 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATTTCCA--C 5581908 Query 14213 ATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | || || | | |||| | || || || ||||| ||||| || || || || | Sbjct 5581907 CTCCAAGCCCTGCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCAATAAATACAATRC 5581848 Query 14271 ATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 | || || | || ||||| | ||| | |||||| || || ||||||| Sbjct 5581847 AAGGGGCCTTAGCCTTTGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACACCCA 5581788 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||||||||| | | || | ||| | ||| || || | ||||| | Sbjct 5581787 CAAACAACTCCACAAATTCTGAAGCTGCACAGGAAAAGAATGGCACACCGGCCTCACCGG 5581728 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC 14450 | | |||| || | ||||| |||||||| || ||| ||| | | ||| || Sbjct 5581727 CAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGGTGGTCCTACCAAAAGACATCCTT 5581668 Query 14451 GTGGGATCCTGGCACC-ACTGCCAAAGTAGCGT--TCAGGTTGTTTAAGGAAGTCCACGA 14507 ||| ||| | ||||| | || |||| | ||||| | ||| | ||| || || | Sbjct 5581667 TTGGAATCTTTGCACCTAAAGC---AGTATACTTATCAGGGTTTTTCAAGAAATCAACCA 5581611 Query 14508 TTTCTTCCAATTC 14520 ||||| |||||| Sbjct 5581610 CTTCTTGCAATTC 5581598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427631899240