Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq595 152 6e-32 seq957 114 2e-20 >seq595 Length=996587 Score = 152 bits (168), Expect = 6e-32 Identities = 242/338 (72%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||||||||| | ||||| || || || | |||| ||| || |||||| | |||| Sbjct 860796 TCAAGGATATCTGCACGATTGGTTGCTGCAACTACAATAATGCCAGTGTTTCCT--TCAA 860853 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| |||||||| || ||||| | ||||||||||| |||||| || || | Sbjct 860854 AACCATCCATTTCTGTCAACAGCTGGTTGAGAGTTTGTTCCCTTTCATCGTTTCCT--CC 860911 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 860912 TCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 860971 Query 9733 TGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || | | | | | | ||| ||| ||||| || ||||| || || ||||||| Sbjct 860972 AGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACACGAGAAGCACCAACACCAA 861030 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | || | ||||| |||| || || || || | |||||| Sbjct 861031 CAAACATCTCAACAAACTCTGAGCCGGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACCA 861089 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || ||| | | ||||| ||||||||||| Sbjct 861090 GCAATTGCCTTGGCTAACAATGTCTTTCCCGTACCTGG 861127 >seq957 Length=6255442 Score = 114 bits (126), Expect = 2e-20 Identities = 199/285 (70%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || |||||||| || |||||||||||||| | |||||||| | Sbjct 5581965 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGTTCTCTCTCATCATTTCC---- 5581910 Query 9674 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||| || ||| ||| | |||| ||||||| ||||||||||||||||| || || Sbjct 5581909 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCCACTGCATCAATCTCATCAATAAATACA 5581852 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 9783 || || || | || || | || ||||| | ||||| ||| || | || || Sbjct 5581851 ATRCAAGG--GGCCTTAGCCTTTGCCTTCTCAAACAAATCCC--TCACTCTAGAAGCTCC 5581796 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9843 |||||| ||||||| ||||||||| | || || | ||| | ||| || ||| | Sbjct 5581795 CACACCCACAAACAACTCCACAAATTCTGAAGCTGCACAGGAAAAGAATGGCACACCGGC 5581736 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| |||| |||| || | ||| || || ||||| || || Sbjct 5581735 CTCACCGGCAACTGCTCTAGCTAAAAGGGTTTTCCCCGTGCCAGG 5581691 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9672 ||||||||||||||||||| || ||||| | ||||| || | ||||||||| || Sbjct 155385 AAACCATCCATCTCTGTCAGCAGCTGGTTTAGTGTTTGCTCTCTTTCATCATTTCCTCCA 155326 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | || ||||| || | ||| | || || ||||||||||| ||||||||||| | ||| Sbjct 155325 CCTA-TACCAGTACCTCTCTGCCTCCCAACAGCATCAATCTCGTCAATGAAGACCAAGCA 155267 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 ||| ||| || ||| | || | ||||| || | | || || || ||||| Sbjct 155266 TGGCGAATTGTCTTTAGCCTTGTTGAATAAATCCCTCACTCTCGAAGCCCCAACTCCAAC 155207 Query 9793 AAACATCTC 9801 ||||||||| Sbjct 155206 AAACATCTC 155198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253662345960