Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq940 111 2e-19 seq945 82.4 8e-11 >seq940 Length=8971605 Score = 111 bits (122), Expect = 2e-19 Identities = 325/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 || || || ||||| || | | || ||||| || || || ||||| |||||||| || Sbjct 8502635 ATTAACTCGTTCGAGAAGGTCAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATC 8502576 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 || || || || |||||| || || ||||| || ||||||||||| | || | | Sbjct 8502575 GCGCAAAAACTCCCCGAGAAGAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCC 8502516 Query 74904 GCGAACGGTGCATCGGAAGTC-ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACC 74960 || || | | | || | ||| ||||| || || ||||| | || ||| ||| | | Sbjct 8502515 GCAAATGATTC-TCCGCCGTCGATCCA--TCGGAGGGCCCACTTGGC-CTTCTTTTCAAC 8502460 Query 74961 GC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGA-CGA 75018 || ||| | || || || || || ||||| || |||||| || || ||||| | | Sbjct 8502459 GCAAGGTATGGTCTCCATTGCGTGAAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTA 8502400 Query 75019 GCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACG 75078 | || | || || ||| |||| |||||||| ||| || ||| | Sbjct 8502399 G-GACTCGAGCAAGAGYCTATACATCTCGGAATGAATGTTTTCGATGGCAATTTGGAAGC 8502341 Query 75079 CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT--TCATGTCGATATT 75136 ||||||| | || ||||| | | ||| || | |||| | ||| || | ||| ||| Sbjct 8502340 CGTAGAAGGCACGYGCCTCGGAGACCTGAAC-TTCTTTCATGAATCGTC-CGGCGAGATT 8502283 Query 75137 CTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCG 75196 ||||| |||||||| || |||| ||||||||| ||||| || | |||||||| || Sbjct 8502282 CTCCAAAACGATGCCATCTGAGGKGGCGAAAAATGCCAGAACGCGACTAATAAAGTGACG 8502223 Query 75197 CTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256 ||| || ||||| || ||||| | || |||| | | || | ||||||| | Sbjct 8502222 CTCGTCAGGGGTGAGGTTTTCCCATTGACGCATGTCCTGGGAGAGGTCGACCTCCTCGGC 8502163 Query 75257 CGTCCAGAA 75265 |||||||| Sbjct 8502162 AGTCCAGAA 8502154 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 7406023 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 7406082 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 7406083 CTGAGCTATGAAAGC 7406097 >seq945 Length=13627481 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 5505953 TGCTTTCTTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5505894 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 5505893 TGAGCTAAGAAAGCA 5505879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209303444200