Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq977 91.5 1e-13 >seq977 Length=5547227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || ||||||||||| || || || |||| || || || Sbjct 1026554 ATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTG 1026613 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| || || || || |||||||| |||| || | || ||| ||||| ||| || Sbjct 1026614 TTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 1026673 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | |||||| ||| || || | ||||| |||| || || Sbjct 1026674 AGCCTTGACATTATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTTACCGGT 1026733 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 || ||||| |||||||| |||||| Sbjct 1026734 TAGGGTTTTCACAAAGATCTGCATC 1026758 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || |||| ||| || || ||| ||||| ||||||||||||||||| ||||| |||| Sbjct 1049519 AAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTCC 1049460 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | ||| || || ||||| || || | ||||||||| | || | | ||| || ||| Sbjct 1049459 TCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATCC 1049400 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||||| |||| | | | ||| || ||| || || | || || | Sbjct 1049399 TGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCGTC 1049340 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| |||||||| Sbjct 1049339 TTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||| || || | |||||| |||||| || || || | Sbjct 917771 ACAAAAATTTG--CAYCCCTCC-CTCAATCACAACACCTGATGTAGAGTTGATTCCTTGT 917715 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| |||||||| | | || |||| ||||||||| ||||| || |||| Sbjct 917714 GGATGTTATAATCTGCAAGTGTCCTGCCATCTTCAAACTGTTTGCCAGCAAAAATCAGAC 917655 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||| || | || | || ||||||||| Sbjct 917654 GCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 917623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540474849827