Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq978 125 5e-24 seq977 109 4e-19 seq964 109 4e-19 seq959 100 2e-16 seq946 87.8 1e-12 >seq978 Length=8767375 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || || ||||| ||||| || | Sbjct 3246302 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATTACTCTGGAAGTCGAGAGTTCT 3246243 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| |||||| || || || ||| | || ||||| || Sbjct 3246242 GATACCATTGACAACGTGAAAGCCAAAATTCAAGATAAGGAGGGTATCCCACCAGACCAG 3246183 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || |||||||||||||| || || ||||||| |||||| | | ||||||||| Sbjct 3246182 CAGAGGTTGATATTTGCCGGCAAGCAGCTTGAAGACGGGCGCACTCTTGCTGATTACAAC 3246123 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | || || ||| | ||| || | ||||| Sbjct 3246122 ATTCAGAAGGAGTCGACCCTTCACTTGGTTCTCAGGCTGAGGGGAGG 3246076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || ||||| || || |||||||| || || | | Sbjct 3246758 ATGCAGATCTTCGTGAAGACCCTTACCGGAAAGACAATTACTCTCGAGGTCGAGAGCTCC 3246699 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| |||| | | || || ||||| | || |||||||| Sbjct 3246698 GACACCATCGACAATGTCAAAGCAAAGA-TCCAAGATAAGGAAGGAATCCCTCCAGATCA 3246640 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| || ||||| || |||| | || | | ||||||||| Sbjct 3246639 GCAAAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGGACCCTTGCCGATTACAA 3246580 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 3246579 CATTCAAAAGGAGTCAAC 3246562 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || || ||||| || ||||| | | Sbjct 3246074 ATGCAGATCTTCGTGAAGACCTTGACAGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 3246015 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || |||||| || ||||| || || | || ||||| || Sbjct 3246014 GATACCATCGACAATGTCAAGGCAAAAA-TTCAGGACAAGGAGGGGATCCCACCAGACCA 3245956 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| || || || |||| || ||| | | || || || Sbjct 3245955 GCAGAGATTGATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGTACTCTTGCTGACTATAA 3245896 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || | || || || | ||| || | |||||| Sbjct 3245895 CATTCAGAAGGAATCGACCCTTCACTTGGTCCTCAGGCTGAGGGGAGGA 3245847 >seq977 Length=5547227 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| | |||||||| ||||| || || || || |||||||| |||||||| | | Sbjct 917074 AATGCAAGTCTTCGTTAAGACCCTTACAGGCAAGACCATCACTCTTGAAGTTGAAAGCTC 917133 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||||| || ||||| || || | || ||||||| Sbjct 917134 AGATACAATTGACAATGTCAAAGCAAAAA-TTCAGGACAAGGAGGGGATTCCTCCAGATC 917192 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || |||| ||| || ||||||||||| || | || || | | ||||||| Sbjct 917193 AGCAAAGATTGATATCTGCGGGGAAACAACTGGAGGATGGTCGTACCCTTGCTGATTACA 917252 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | || || || ||||| ||| | || | ||||| Sbjct 917253 ATATCCAGAAGGAGTCTACACTTCACCTTGTTTT 917286 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| ||||| || || ||||| | Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || ||||| | || || || ||||| | || || || || Sbjct 1026013 GATACTATTGATAATGTCAAGACAAAGA-TTCAGGATAAGGAAGGGATCCCTCCGGACCA 1025955 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || ||||||||| || || | | ||||| || Sbjct 1025954 ACAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATAA 1025895 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 1025894 CATTCAAAAAGAGTCCAC 1025877 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||| ||||| ||||| ||| |||| || || || ||||| || || ||||| | Sbjct 916846 AATGCRAATTTTTGTTAAGACCATCACAGGCAAGACCATCACGCTTGAGGTTGAGAGTTC 916905 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| || |||| | || ||||| |||||| | || || |||| Sbjct 916906 TGACACCATCGATAATGCCAAGGCAAAGA-TTCAAGACAAGGAAGGTATCCCACCTGATC 916964 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || ||||| || ||||||||||| || | || || | | || |||| Sbjct 916965 AGCAAAGATTGATCTTTGCTGGGAAACAACTGGAGGATGGTCGAACCCTTGCTGACTACA 917024 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| |||||||||||||| |||||| | || || Sbjct 917025 ACATTCAAAAAGAGTCCACCTTACATCTTGTCTT 917058 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||| | ||||||| || || || ||||| || || ||| | | Sbjct 916620 AATGCAAATATTTGTTWAGACCCTCA--GGCAAGACCATCACGCTTGAGGTTRAGAGTTC 916677 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || ||| ||| ||||| |||||| | || || ||||| Sbjct 916678 TGACACCATTGATAACGTCAAGGCAAAGATTCAAGACAAGGAAGGTRTCCCACCTGATCA 916737 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || |||||||| ||||||||||| || | || ||| | | || ||||| Sbjct 916738 GCAAAGATTGATCTTTGCCGGGAAACAACTGGAGGATGCTCGAACTCTTGCTGACTACAA 916797 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 916798 CATTCAAAAGGAGTCCAC 916815 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || |||||||| || || || || ||||||||||| || || Sbjct 1049077 AAGATGCAAATTTTTGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGT 1049136 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || | || || || || || ||| | || ||||| Sbjct 1049137 TCTGATACCATTGATAATGTCAAGGC-TAAGATCCAAGATAAGGAGGGTATTCCTCCAGA 1049195 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | || || |||||||| ||||| || |||| || || | | |||||| Sbjct 1049196 TCAGCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGGACGCTCGCCGATTA 1049255 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || |||||||| | ||| | ||| Sbjct 1049256 TAACATTCAGAAGGAGTCCACCCTCCATCTCGTT 1049289 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || || ||| | || | ||||| || | | Sbjct 4466030 ATGCAAATCTTTGTGAAAACCCTAACTGGTAAGACGGTAACGTTGGAAGTCGAGAGCTCT 4466089 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| |||| | || | || ||||||||||| | || || ||||| Sbjct 4466090 GACGCGATTGATAATGTTAAGGCCAAGA-TTCAAGACAAAGAAGGCATTCCTCCCGATCA 4466148 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || || |||| || || || |||||||| Sbjct 4466149 ACAGCTCTTGATTTTCGCCGGAAAGCAGTTGGAGGA----------TTGGGTGATTACAA 4466198 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| || || ||| | ||||||||| | || || || Sbjct 4466199 GATTCAAAAGGAGTCTACTTTGCATCTTGTTTTAAGGCTCCGCGGTGG 4466246 >seq964 Length=1826015 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || ||||| || || || || | Sbjct 764500 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTCGAGAGTTCT 764441 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||| || ||||| |||||| | || ||||| || Sbjct 764440 GATACCATTGACAATGTGAAAGCTAAAA-TTCAAGACAAGGAAGGTATCCCACCAGACCA 764382 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| || || || |||| ||||| | | || || || Sbjct 764381 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGCACCCTTGCTGACTATAA 764322 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || ||||| | || || || | || ||| | |||||| Sbjct 764321 CATTCAGAAGGAATCCACCCTTCACTTGGTCCTCAGATTGAGGGGAGGA 764273 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| |||||||| ||||| || ||||| || || ||||| | | Sbjct 764956 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACCATCACCCTGGAGGTTGAGAGCTCC 764897 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || ||||| | || ||||| || Sbjct 764896 GACACCATTGACAATGTCAAGGCTAAGA-TTCAGGATAAGGAAGGCATTCCCCCAGACCA 764838 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || |||||||| | || ||| | | |||||||| Sbjct 764837 GCAGAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTCGCTGATTACAA 764778 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 764777 CATCCAGAAGGAGTCCAC 764760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||||| || ||||| || |||||| | || || || | Sbjct 764045 AATGCAGATTTTTGTGAAGACCCTGACAGGAAAGACCATCACTTTGGAGGTGGAGAGTTC 763986 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | ||||| ||||| || ||| | || || || | Sbjct 763985 CGACACAATTGATAATGTGAAGGC-TAAAATCCAGGACAAGGAGGGTATTCCCCCCGACC 763927 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || ||||| || || ||| ||||||| | ||| ||| | | || |||| Sbjct 763926 AGCAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGACGTACTCTGGCTGACTACA 763867 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 763866 ACATCCAGAAGGAGTCCAC 763848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 23602 TTACTTAAA---ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 ||| ||||| |||||||| || ||||| ||||| || ||||| || || |||||||| Sbjct 765196 TTATTTAAACAGATGCAGATCTTTGTTAAGACCCTTACTGGAAAGACAATTACTCTCGAG 765137 Query 23659 GTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || | | ||||| | || ||| |||| |||| | | || || ||||| | Sbjct 765136 GTCGAGAGCTCCGACACCATAGACAATGTTAAGGCAAAGA-TCCAAGATAAGGAAGGGAT 765078 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || ||||| || || | | || |||||||| || || || || |||| | ||| | Sbjct 765077 TCCCCCAGACCAGCAAAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAACTCT 765018 Query 23778 AGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||||||||| ||||| || || || | || || ||| | | ||| | ||||| Sbjct 765017 TGCTGATTACAACATTCAAAAGGAATCGACCCTCCACTTGGTTCTTCGTTTGAGGGGAGG 764958 >seq959 Length=5381930 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||||||||| || || ||||| || || || || || | Sbjct 731608 ATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTTCT 731667 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||||| ||||| || || | || || || || Sbjct 731668 GACACCATCGACAATGTCAAGGC-CAAAATCCAGGACAAGGAGGGCATTCCACCGGACCA 731726 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||| || || || ||||||| | || ||| || ||||| Sbjct 731727 GCAACGTCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCAGAACCCTAGCAGACTACAA 731786 Query 23790 CATACAAAAAGAGTCCACA 23808 |||||| || || |||||| Sbjct 731787 CATACAGAAGGAATCCACA 731805 >seq946 Length=5553863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || ||||||||| | || || ||||| ||| | | || ||||| || || ||| ||||| Sbjct 333560 GAMAAAGAAGGTATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 333501 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||||| | ||| || || || |||||||| || ||| | || || ||||| Sbjct 333500 GATGGCCGTACTTTGGCCGACTATAATATCCAAAAAGAATCAACACTTCACTTGGTTTTG 333441 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||||||| Sbjct 333440 AGGCTCAGAGGAGGA 333426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005567017332