Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq940 165 1e-35 seq558 107 3e-18 >seq940 Length=8971605 Score = 165 bits (182), Expect = 1e-35 Identities = 388/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||| || || || |||||||| ||||| ||||||| ||||| ||||| || || || Sbjct 8502675 TAAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGT 8502616 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAA 48255 | |||||||||||| || ||||| || | ||||||||| | ||| ||| | || || | Sbjct 8502615 CAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGA 8502557 Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTTCGTT 48313 ||||||| || || ||| ||||| ||| | | ||||| || || || || Sbjct 8502556 AGAATATCCCCTCGACGCAAGCAAAGGCG--ACCAAACGCTCCGCAAATGATTCTCCGCC 8502499 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || ||||| || | ||||| | |||||||| | || ||||| || || || || || Sbjct 8502498 GTCGATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCCATTGC 8502439 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 | |||||| || || || | || |||| || | || | || || ||||| Sbjct 8502438 GTGAAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATA 8502379 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| ||||| ||||| ||||| || || || || || ||||| || | || || | Sbjct 8502378 CATCTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCCTCGGA 8502319 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 || ||| || || | |||||| | || | |||||| || || ||||| | Sbjct 8502318 GACCTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCTGAGGK 8502259 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || |||||||| | || | ||||||| | |||| | || || || | ||| Sbjct 8502258 GGCGAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTTTCCCA 8502199 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 | | || || | || | || || || || || ||||| || || ||||||||||| Sbjct 8502198 TTGACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCTTT 8502139 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || ||||| | ||| || | | |||||| ||||| || || Sbjct 8502138 CTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACAT 8502097 >seq558 Length=4929555 Score = 107 bits (118), Expect = 3e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | || |||| ||| | || |||| |||||||| |||||| Sbjct 349845 ACCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCAGCATTGGAACAATACC 349786 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| ||||||||||| ||||||||||||| | || ||||| ||| || || Sbjct 349785 ATTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCACGAATGTTATGAACAGA 349726 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || ||||| || || || | ||| || || | ||||| || || Sbjct 349725 TACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCTTGAGGGTATCATATAT 349666 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || ||||| || ||||| | || ||||||||| Sbjct 349665 GCCCTCAATGCTGTCTTCTTTCATGCACACCAGGAAACAGCTA 349623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/160 (74%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||| |||||||||| ||||| || | ||||||||| || ||||| |||| ||| ||| Sbjct 350379 TCTTTTTCATATTGGGTATAAAGTCTTTCAAATTCTTCACCCCAGCAATCAGCCAGACCA 350320 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCAT-CTTCCTTAACTCGT----TTCA 78012 || ||||||||| || | || ||||| || |||| | ||||| ||| | || Sbjct 350319 GGAGCTTCATTTGGACAGAACACAGACCATTCCCCATTCCCCCTTATCTCACCCTCTGCA 350260 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 ||||||||||||| | ||| ||| || || |||||||| Sbjct 350259 TAAAGAGATCAGGCACCCAAAGA-CATAGAAAAGATCTCG 350221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660298990560