Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq940 138 2e-27 seq558 120 4e-22 >seq940 Length=8971605 Score = 138 bits (152), Expect = 2e-27 Identities = 382/582 (66%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 ||| || || || |||||||| || || ||||||| ||||| ||||| || || || Sbjct 8502675 TAAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGT 8502616 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA-GAAA 46744 | || |||||||| || || || || | ||||||||| || || ||| ||| || | Sbjct 8502615 CAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGA 8502557 Query 46745 AGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CATCATT 46802 ||||||| || || || || || ||||| | | ||| || || || | | Sbjct 8502556 AGAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTC--CGCAAATGATTCTCCGCC 8502499 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | ||||| | | ||||| | ||||| || | || ||||| || || || || || Sbjct 8502498 GTCGATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCCATTGC 8502439 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 | |||||| || || || || || |||| || | || | || || ||||| Sbjct 8502438 GTGAAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATA 8502379 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 ||| || |||||||||||||| || || || || || ||||| || | || || | Sbjct 8502378 CATCTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCCTCGGA 8502319 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 | ||| || ||| | |||||| | | | |||||| || || ||||| | Sbjct 8502318 GACCTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCTGAGGK 8502259 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 || |||||||||| || | ||||||| | || || | || || || | ||| Sbjct 8502258 GGCGAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTTTCCCA 8502199 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 | | || || | || | || || || || || |||||||| || ||||||||||| Sbjct 8502198 TTGACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCTTT 8502139 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || ||||| | ||| || | | | ||||| || ||||| || Sbjct 8502138 CTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACAT 8502097 >seq558 Length=4929555 Score = 120 bits (132), Expect = 4e-22 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | ||||||| ||| | || |||| |||||||| ||| || Sbjct 349845 ACCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCAGCATTGGAACAATACC 349786 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||||||||||||| |||||||| ||| || ||| Sbjct 349785 ATTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCACGAATGTTATGAACAGA 349726 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || || ||||| || ||| ||| | ||| || || | || ||||| || Sbjct 349725 TACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCTTGAGGGTATCATATAT 349666 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| || || || || ||||| | || ||||||||| Sbjct 349665 GCCCTCAATGCTGTCTTCTTTCATGCACACCAGGAAACAGCTA 349623 Score = 100 bits (110), Expect = 4e-16 Identities = 120/160 (75%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||| |||||||||| ||||| | | ||||||||| || ||||| |||| ||| |||| Sbjct 350379 TCTTTTTCATATTGGGTATAAAGTCTTTCAAATTCTTCACCCCAGCAATCAGCCAGACCA 350320 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCAT-CTTCCTTA----ACCCGTTTCA 76607 ||| |||||| ||||| | || ||||| || |||| | ||||| |||| | || Sbjct 350319 GGAGCTTCATTTGGACAGAACACAGACCATTCCCCATTCCCCCTTATCTCACCCTCTGCA 350260 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 ||||||||||||| | ||| ||| || || |||||||| Sbjct 350259 TAAAGAGATCAGGCACCCAAAGA-CATAGAAAAGATCTCG 350221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712925675465280